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How to use this wiki
Anum Azam Glasgow edited this page Jan 24, 2022
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This wiki is housed on Github and is not private, but I think only people who are members of our lab's GitHub organization can add or edit pages. It's not indexed by Google.
- Everyone is welcome to edit any of the pages using the "Edit" button at the upper right of any page, right above the sidebar.
- You can also create new pages, and all pages automatically go into the "Pages" drop-down of the sidebar.
- You can also add those pages into the structured sidebar below the "Pages" drop-down. That structured sidebar is itself just a file formatted in markdown, but unlike other pages it appears at all times in the wiki. Because it's just a markdown file, you can link to other pages using double brackets, i.e.
[[page-you-want-to-link-to]]
- More information on editing and adding pages to GitHub wikis is available from GitHub
Markdown is meant to be easy and readable. Just type!
- use
#
for section headers.#
is a big title, while##
through######
get progressively smaller - use - for bullet points. You can add spaces before them to indent.
- use
[text](link)
to link somewhere, like another website. - use
[[page-name]]
to link to another page on the wiki, and[[page-name#section-name]]
to link to a specific section. - use backticks
`text`
to get monospaced text with a gray background. Great for adding code. You can also make code/text blocks by using three backticks``` text over many lines ```
- Here's a more comprehensive resource for understanding markdown syntax: https://github.com/adam-p/markdown-here/wiki/Markdown-Cheatsheet
- Alternatively, you can write pages in other formatting languages, by changing the "Edit Mode" option in the toolbar when editing a page. The other options are:
- AsciiDoc
- Creole
- MediaWiki
- Org-mode
- Pod
- RDoc
- Textile
- reStructuredText
- Use the search bar at the very top of the GitHub page, the one that says "Search or jump to...".
- After you type your search term, make sure you select "In this repository" and not "All GitHub"
- When searching, GitHub automatically shows results from code in this repository first - this is not what you want. You should select "Wikis" from the left-hand sidebar to get results from wiki pages.
- Advanced search terms are described here
To add an image, it needs to have a URL. Here is an example:
![](https://github.com/glasgowlab/home/blob/main/images/rosetta_logo.png)
If you would like to upload a new image, you can do so by storing it in this repository's images folder (https://github.com/glasgowlab/home/blob/main/images/)
Full instructions:
- Navigate to < > Code in the toolbar
- Click on the images folder
- Click on Add file > Upload files
- Drag your file into the box, then click on Commit changes once it is finished uploading
- Return to the images folder, and click on the filename of your image, this will open it in the tab
- Copy the URL
- On the page where you want to insert the image, type
![](<URL>)
- New member onboarding
- Lab jobs
- Seminar schedules
- How to order
- Group meeting schedule
- Lab notebooks
- Funding opportunities
- Philosophy of science
- Wet lab basics
- Lab safety
- Waste disposal
- Chemical inventory
- -20C inventory
- Molecular biology
- Buffers and reagents
- Protocols library
- DNA synthesis and primers
- 80C freezer organization
- Using server
- C2B2 HPC access
- Update lab website
- Cluster parallel processing
- Mercury at CUIMC
- Getting started with Rosetta
- Install Pyrosetta
- Tutorials
- Clone Github
- Gromacs-Tutorial
- Cluster Specs
- Deep MSA and Statistical Coupling Analysis
- MMseqs2: Make MSA and analyze taxonomy
- Useful tools