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35 Open 15 Closed
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Issues list

Figure out whether to include non-Phylonym clade definitions in CLADO
#85 opened Nov 19, 2020 by gaurav
Obtain updated definition citations from Regnum
#84 opened Nov 18, 2020 by gaurav
Unencrypt Phylonym files
#82 opened Aug 28, 2020 by gaurav
Fix definition sources in Phylonym
#81 opened Aug 28, 2020 by gaurav
Add comparisons with Open Tree of Life resolution
#72 opened Mar 4, 2020 by gaurav
Add unit tests for regnum2phyx
#71 opened Feb 17, 2020 by gaurav
Update citation format to CSL-JSON
#69 opened Apr 26, 2019 by gaurav
Add support for resolving to trichotomies in model 2.0 ontologies
#68 opened Apr 5, 2019 by gaurav
phyx2ontology.js is missing some equivalentClass statements
#67 opened Apr 5, 2019 by gaurav
1
Add shape-based testing to the Clade Ontology
#65 opened Mar 26, 2019 by gaurav
1
Implement citations for phyloreferences in the Clade Ontology
#64 opened Mar 26, 2019 by gaurav
Should the Clade Ontology record specifiers outside of the equivalentClass expression?
#62 opened Feb 27, 2019 by gaurav
Determine how to represent specimens as OWL restrictions manuscript Issue requiring summarization in manuscript
#61 opened Feb 27, 2019 by gaurav
4
Figure out why some phyloreferences don't resolve correctly in JFact
#55 opened Jan 16, 2019 by gaurav
Replace Phyloref Ontology with its version URI
#53 opened Dec 20, 2018 by gaurav
Information in Regnum that should be included in the Clade Ontology
#46 opened Nov 1, 2018 by gaurav
hasInternalSpecifier and hasExternalSpecifier should be removed unless they're needed
#39 opened Jun 26, 2018 by gaurav
Add support for private phyloreferences
#38 opened Jun 25, 2018 by gaurav
4
Determine licensing for the Clade Ontology
#37 opened Jun 22, 2018 by gaurav
3
Improve testing of long-running PHYX files
#36 opened Jun 19, 2018 by gaurav
1
Create a table of all included phyloreferences
#34 opened Jun 18, 2018 by gaurav
2
Copy terms we use from other community ontologies into our ontology
#33 opened Jun 18, 2018 by gaurav
Identify and write tests for outstanding Unicode encoding issues
#28 opened Apr 14, 2018 by gaurav
Add support for phyloreferences with multiple external specifiers
#27 opened Apr 13, 2018 by gaurav
1
Separate phyx2owl/phyloref into a separate Python library
#23 opened Mar 28, 2018 by gaurav
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