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Every phyloreference in the Clade Ontology can have three kinds of citations:
pre-existing citation: the citation for the scientific name, i.e. its dwc:namePublishedIn.
definitional citation: where the clade definition was published. For most Phylonym definitions, this will be Phylonym itself, but it's possible that some of the clades have been published elsewhere first.
reference phylogeny citation: a citation to the phylogeny that should be used as a reference phylogeny. One of these will be the primary reference phylogeny, but there might be secondary citations as well.
The first two should be fairly straightforward to model:
pre-existing citations can be recorded using dwc:namePublishedIn, e.g. :phyloref1 dwc:namePublishedIn { bibo:doi "10.1010/...." ... }.
definitional citation can be recorded using IAO:definition source, e.g. :phyloref1 "IAO:definition source" { bibo:doi "10.1010/..." ... }
For the last one, note that we don't currently mandate that the phylogenies in a Phyx file are explicitly marked as the primary phylogeny. phyloref/klados#133 covers updating the Curation Tool so that we can set that. Once that's working, we can use something like prov:wasQuotedFrom or prov:hadPrimarySource to link the phylogeny to its primary source.
The text was updated successfully, but these errors were encountered:
gaurav
changed the title
Model citations for phyloreferences in the Clade Ontology
Implement citations for phyloreferences in the Clade Ontology
Mar 26, 2019
Every phyloreference in the Clade Ontology can have three kinds of citations:
dwc:namePublishedIn
.The first two should be fairly straightforward to model:
dwc:namePublishedIn
, e.g.:phyloref1 dwc:namePublishedIn { bibo:doi "10.1010/...." ... }
.IAO:definition source
, e.g.:phyloref1 "IAO:definition source" { bibo:doi "10.1010/..." ... }
For the last one, note that we don't currently mandate that the phylogenies in a Phyx file are explicitly marked as the primary phylogeny. phyloref/klados#133 covers updating the Curation Tool so that we can set that. Once that's working, we can use something like
prov:wasQuotedFrom
orprov:hadPrimarySource
to link the phylogeny to its primary source.The text was updated successfully, but these errors were encountered: