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Create a table of all included phyloreferences #34

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gaurav opened this issue Jun 18, 2018 · 2 comments
Open

Create a table of all included phyloreferences #34

gaurav opened this issue Jun 18, 2018 · 2 comments

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@gaurav
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gaurav commented Jun 18, 2018

This table should provide a list of all the PHYX files currently included as well as lists of all defined phyloreferences, broken down by the types of phyloreferences, the state of each phyloreference (draft, submitted, etc.), and the taxa included in specifiers. This would allow us to get a high-level picture of what phyloreferences we have already curated and what gaps we might have in our curation effort.

This could be a Markdown file that is generated automatically during testing and stored in the repository.
@gaurav gaurav mentioned this issue Jun 18, 2018
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gaurav commented Jun 18, 2018

This should also include a list of all OWL/RDF properties associated with phyloreferences in OWL, which would help identify data that is being incorrectly lost in the JSON-to-OWL transformation.

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gaurav commented Jul 6, 2018

A good first step here would just be counts of the number of phyloreferences tested, which we should be able to obtain from the TAP status line at the end of each jphyloref test run.

gaurav added a commit that referenced this issue Jul 17, 2018
@gaurav
Merge pull request #35 from phyloref/update-README
11fe4a7 
Since the name and role of this repository has changed (#19), we no longer refer to these as testcases but as PHYX files. I've updated the README file to reflect this (closes #30) and renamed some of the directories in this repository to make their purpose clearer, as well as cleaning out some out-of-date information that no longer needs to be stored outside the PHYX file itself. Individual lists of phyloreferences have been removed, and will eventually be replaced by an automatically generated table that provides information on the types of included phyloreferences (#34).
@gaurav gaurav mentioned this issue Dec 23, 2018
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