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315 Open 764 Closed
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Issues list

Show bioassay sparsity metrics in the diagnostic tab gui Issues or pull requests involving the Web UI single cell Issues related to single-cell data support
#1295 opened Nov 23, 2024 by arteymix
2 tasks
@arteymix
Automation of "subset" tag low priority
#1294 opened Nov 21, 2024 by xnrxng
5
Differential expression with single cell data high priority Issues that require immediate attention single cell Issues related to single-cell data support
#1293 opened Nov 21, 2024 by arteymix
@arteymix
Tag subsets with a copy of the factor value's characteristics when subsetting enhancement Enhance the code or user experience low priority
#1292 opened Nov 15, 2024 by arteymix
eBayes fails on dataset bug
#1291 opened Nov 14, 2024 by ppavlidis
Make selection of arbitirary baselines for DEA deterministic and/or add more rules. enhancement Enhance the code or user experience
#1290 opened Nov 14, 2024 by ppavlidis
6
Filter cells to be included in a pseudo-bulk low priority single cell Issues related to single-cell data support
#1287 opened Nov 5, 2024 by arteymix
Provide auto-completion for enumerated options cli Issues affecting the CLI enhancement Enhance the code or user experience low priority
#1285 opened Nov 1, 2024 by arteymix
Restore/improve support for non-GEO dataset upload (esp. single-cell) enhancement Enhance the code or user experience
#1284 opened Nov 1, 2024 by ppavlidis
@arteymix
1
Show pubpeer plugin results on experiment pages with publications enhancement Enhance the code or user experience gui Issues or pull requests involving the Web UI low priority
#1283 opened Nov 1, 2024 by ppavlidis 1.31.13
3
Dataset searches from home page yielding a single experiment should navigate directly there enhancement Enhance the code or user experience gui Issues or pull requests involving the Web UI minor
#1282 opened Nov 1, 2024 by ppavlidis
Support writing data matrices with target scale type without generating new vectors cli Issues affecting the CLI enhancement Enhance the code or user experience single cell Issues related to single-cell data support
#1281 opened Oct 31, 2024 by arteymix
@arteymix
3
Always generate a count QT if possible enhancement Enhance the code or user experience low priority single cell Issues related to single-cell data support
#1280 opened Oct 31, 2024 by arteymix
@arteymix
2
Filter which subsets are retained when generating pseudo-bulks enhancement Enhance the code or user experience single cell Issues related to single-cell data support
#1279 opened Oct 31, 2024 by arteymix
@ppavlidis @arteymix @rachadele
Expose EE subsets in the REST API rest-api Issues or pull requests involving the RESTful API single cell Issues related to single-cell data support
#1277 opened Oct 31, 2024 by arteymix
5 tasks
Update maven-site-plugin to 3.21 enhancement Enhance the code or user experience low priority
#1275 opened Oct 30, 2024 by arteymix 1.32.0
1
Keep track of the number of cells with at least one expressed gene in samples and pseudo-bulks single cell Issues related to single-cell data support
#1273 opened Oct 28, 2024 by arteymix
3 tasks
@arteymix
4
Use 200 instead of "default" as a response code in docs enhancement Enhance the code or user experience minor rest-api Issues or pull requests involving the RESTful API
#1272 opened Oct 28, 2024 by arteymix
@arteymix
Add a /datasets/{dataset}/quantitationTypes/{quantitationType} endpoint enhancement Enhance the code or user experience rest-api Issues or pull requests involving the RESTful API
#1271 opened Oct 28, 2024 by arteymix
@arteymix
User interface requirements for single-cell gui Issues or pull requests involving the Web UI single cell Issues related to single-cell data support
#1270 opened Oct 25, 2024 by arteymix
4 of 8 tasks
2
@arteymix
1
Fill missing feature type when converting legacy genes.tsv.gz to features.tsv.gz bug low priority single cell Issues related to single-cell data support
#1269 opened Oct 24, 2024 by arteymix
@arteymix
Generate data histograms to help determine the scale type enhancement Enhance the code or user experience low priority
#1268 opened Oct 24, 2024 by arteymix
2 tasks
Error when using splitExperiment CLI for GSE123919 bug high priority Issues that require immediate attention
#1267 opened Oct 24, 2024 by SalvaSherif2532 1.31.13
@arteymix
Include single-cell characteristics to the EE2C table single cell Issues related to single-cell data support
#1266 opened Oct 23, 2024 by arteymix
@arteymix
Add single-cell fields to the search index single cell Issues related to single-cell data support
#1265 opened Oct 23, 2024 by arteymix
@arteymix
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