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Always generate a count QT if possible #1280

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arteymix opened this issue Oct 31, 2024 · 2 comments
Open

Always generate a count QT if possible #1280

arteymix opened this issue Oct 31, 2024 · 2 comments
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enhancement Enhance the code or user experience low priority single cell Issues related to single-cell data support

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According to @rachadele, having counts is best for assigning cell types.

Some of the data that we import might not be presented as counts, but there might be enough information to generate them.
@arteymix arteymix self-assigned this Oct 31, 2024
@arteymix arteymix added single cell Issues related to single-cell data support low priority labels Oct 31, 2024
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This is low priority because I expect most datasets out there to use counts.

@arteymix arteymix changed the title Export single-cell data as counts or always generate a count QT if possible Always generate a count QT if possible Nov 1, 2024
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arteymix commented Nov 1, 2024

Writing counts to disk is covered in #1281.

@arteymix arteymix added the enhancement Enhance the code or user experience label Nov 1, 2024
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enhancement Enhance the code or user experience low priority single cell Issues related to single-cell data support
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