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@galelab

Gale Lab at the University of Minnesota

We study innate immunity to virus infection, intracellular immune processes, host response to viral infection, tuberculosis vaccine development and more.

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  1. scPathoQuant scPathoQuant Public

    single cell pathogen alignment and quantification tool

    Python 7 1

  2. Whitmore_scPathoQuant_testSets Whitmore_scPathoQuant_testSets Public

    Analysis for scPathoQuant software

    R 2

  3. Estes_GeoMx_DSP Estes_GeoMx_DSP Public

    1 1

  4. GaleGEAnalysis GaleGEAnalysis Public

    R

  5. PublishedCode PublishedCode Public

    Links to code for recent publications

  6. SCWrapper SCWrapper Public

    R

Repositories

Showing 10 of 16 repositories
  • Sung_RhCMV_TB_IL15_Attenuation Public

    Bulk RNA-seq analysis of 68-1 RhCMV/TB6Ag and its attenuated variant vaccine signatures of RM whole blood samples and overlapping with RhCMV/SIV IL-15 signature.

    galelab/Sung_RhCMV_TB_IL15_Attenuation’s past year of commit activity
    R 0 0 0 0 Updated Oct 16, 2024
  • scViz Public

    Package of single cell visualization methods

    galelab/scViz’s past year of commit activity
    R 0 0 0 0 Updated Aug 28, 2024
  • scPathoQuant Public

    single cell pathogen alignment and quantification tool

    galelab/scPathoQuant’s past year of commit activity
    Python 7 BSD-3-Clause 1 1 0 Updated Jul 30, 2024
  • Sacha_CyCMV-FLU_2024 Public

    Bulk RNA sequencing analysis for Cynomolgus macaques given CyCMV/flu vectors

    galelab/Sacha_CyCMV-FLU_2024’s past year of commit activity
    R 0 0 0 0 Updated May 24, 2024
  • Paiardini_Modulation_type_I_Interferon Public
    galelab/Paiardini_Modulation_type_I_Interferon’s past year of commit activity
    R 0 0 0 0 Updated May 20, 2024
  • Malouli_Signature_of_ddCyCMV-SIV_protection Public

    Details the analysis procedure fo identifying transcriptomic signature of ddCyCMV-SIV protection

    galelab/Malouli_Signature_of_ddCyCMV-SIV_protection’s past year of commit activity
    Shell 0 1 0 0 Updated May 20, 2024
  • Tisoncik-Go_ZIKA_NHP_BulkRNAseq_FetalBrain Public
    galelab/Tisoncik-Go_ZIKA_NHP_BulkRNAseq_FetalBrain’s past year of commit activity
    R 0 1 0 0 Updated Apr 19, 2024
  • Tisoncik-Go_ZIKA_NHP_Geomx_FetalBrain Public

    Contains analysis code for the Geomx spatial analysis of NHP fetal brains infected with zika

    galelab/Tisoncik-Go_ZIKA_NHP_Geomx_FetalBrain’s past year of commit activity
    R 0 0 0 0 Updated Apr 19, 2024
  • Whitmore_scPathoQuant_testSets Public

    Analysis for scPathoQuant software

    galelab/Whitmore_scPathoQuant_testSets’s past year of commit activity
    R 2 0 0 0 Updated Apr 8, 2024
  • Olson_Latent_HIV_Infection Public

    This repository holds codes for bioinformatic analysis in paper Latent HIV infection disrupts cell-intrinsic innate immunity

    galelab/Olson_Latent_HIV_Infection’s past year of commit activity
    R 0 1 0 0 Updated Jun 1, 2022
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