Single cell visualizations

Package of single cell vizualization methods

Install

To download in R run the following commands

library('devtools')
install_github('galelab/scViz')
library(scViz)

How to execute pipeline for heatmap

folder <- "./test_DE_data/" # test data a part of repository

data <- format_data(folder=folder)

clusters <- sc_heatmap(data$data)

Output files for heatmap

---

• heatmap.png - heatmap of DE genes in each comparison