Repositories list

• Sung_RhCMV_TB_IL15_Attenuation

  Public
  Bulk RNA-seq analysis of 68-1 RhCMV/TB6Ag and its attenuated variant vaccine signatures of RM whole blood samples and overlapping with RhCMV/SIV IL-15 signature.

  R

  •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

• scViz

  Public
  Package of single cell visualization methods

  R

  •0•0•0•0•Updated Aug 28, 2024Aug 28, 2024

• scPathoQuant

  Public
  single cell pathogen alignment and quantification tool

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•7•1•0•Updated Jul 30, 2024Jul 30, 2024

• Sacha_CyCMV-FLU_2024

  Public
  Bulk RNA sequencing analysis for Cynomolgus macaques given CyCMV/flu vectors

  R

  •0•0•0•0•Updated May 24, 2024May 24, 2024

• Paiardini_Modulation_type_I_Interferon

  Public
  R

  •0•0•0•0•Updated May 20, 2024May 20, 2024

• Malouli_Signature_of_ddCyCMV-SIV_protection

  Public
  Details the analysis procedure fo identifying transcriptomic signature of ddCyCMV-SIV protection

  Shell

  •1•0•0•0•Updated May 20, 2024May 20, 2024

• Tisoncik-Go_ZIKA_NHP_BulkRNAseq_FetalBrain

  Public
  R

  •1•0•0•0•Updated Apr 19, 2024Apr 19, 2024

• Tisoncik-Go_ZIKA_NHP_Geomx_FetalBrain

  Public
  Contains analysis code for the Geomx spatial analysis of NHP fetal brains infected with zika

  R

  •0•0•0•0•Updated Apr 19, 2024Apr 19, 2024

• Whitmore_scPathoQuant_testSets

  Public
  Analysis for scPathoQuant software

  R

  •0•2•0•0•Updated Apr 8, 2024Apr 8, 2024

• Olson_Latent_HIV_Infection

  Public
  This repository holds codes for bioinformatic analysis in paper Latent HIV infection disrupts cell-intrinsic innate immunity

  R

  •1•0•0•0•Updated Jun 1, 2022Jun 1, 2022

• Stokes_SC_Atlas_ZIKV_brain_infection

  Public
  Contains the single cell analysis for Caleb Stokes work with human fetal brain cells and iNPC cells infected with Zika

  R

  •0•0•0•0•Updated Feb 25, 2022Feb 25, 2022

• Estes_GeoMx_DSP

  Public
  MIT License

  •1•1•0•0•Updated Nov 19, 2021Nov 19, 2021

• ExprAnalysisPipeline

  Public
  HTML

  •0•0•0•0•Updated Aug 20, 2020Aug 20, 2020

• GaleGEAnalysis

  Public
  R

  •0•0•0•0•Updated May 14, 2020May 14, 2020

• SCWrapper

  Public
  R

  •0•0•0•0•Updated Apr 2, 2020Apr 2, 2020

• PublishedCode

  Public
  Links to code for recent publications

  0•0•0•0•Updated Feb 14, 2020Feb 14, 2020