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24 Open 13 Closed
24 Open 13 Closed
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Issues list

关于seurat计算的问题
#42 opened Nov 25, 2024 by TATABOX99
analyzed data are NOT available
#41 opened Nov 2, 2024 by xiaoshanpai
错误于if (class(A_norm) != "matrix") {: the condition has length > 1
#40 opened Oct 19, 2024 by wuxiangning
请问您文章中的scMetabolism 结果是怎么实现的？
#39 opened Oct 19, 2024 by wuxiangning
怎么计算出FC和P值
#38 opened Oct 14, 2024 by wuxiangning
2
这个分析和基因集合打分有什么本质的区别么？
#36 opened Aug 2, 2024 by schnappi-wkl
1
Error in if (class(A_norm) != "matrix") { : the condition has length > 1 In addition: Warning message: In asMethod(object) : sparse->dense coercion: allocating vector of size 14.3 GiB
#35 opened Jul 11, 2024 by PingXR
1
Error: (converted from warning) 'as(<matrix>, "dgeMatrix")' is deprecated. Use 'as(as(as(., "dMatrix"), "generalMatrix"), "unpackedMatrix")' instead.
#34 opened Jul 4, 2024 by Noralii
Installation fails due to failure of dependency VISION (which is due to loe)
#32 opened May 21, 2024 by bbimber
3
Error in if (class(A_norm) != "matrix") { : the condition has length > 1 此外: Warning message: In asMethod(object) : sparse->dense coercion: allocating vector of size 5.9 GiB
#30 opened Apr 15, 2024 by Xxian10
1
Error in if (tolower(filter) == "novar") { : missing value where TRUE/FALSE needed In addition: Warning messages: 1: In asMethod(object) : sparse->dense coercion: allocating vector of size 21.9 GiB 2: In readSignaturesInput(signatures) : NAs introduced by coercion
#29 opened Feb 22, 2024 by ltgmri
1
uncompatible packages for install scMetabolism
#27 opened Jan 23, 2024 by ZixuanEYE
3
Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE.
#26 opened Jan 14, 2024 by EvaChung6
6
Error in data.frame(C = consistency, pValue = pvals, FDR = fdr) : arguments imply differing number of rows: 1, 0
#25 opened Sep 20, 2023 by wchenqi
3
Error in "Computing differential signature tests..." step
#21 opened Apr 6, 2023 by JunyanKan
4
What does the negative values in the result mean?
#20 opened Jan 10, 2023 by Pang-Ka
DimPlot.metabolism function
#19 opened Dec 16, 2022 by joe-jhou2
1
Error: as(, "dgeMatrix") is deprecated since Matrix 1.5-0; do as(as(as(., "dMatrix"), "generalMatrix"), "unpackedMatrix") instead
#18 opened Nov 27, 2022 by XuenaXie
6
how to deal with batcheffect if the analysis needs to be done on raw count data?
#15 opened Oct 8, 2022 by ygz605500160
1
Error: as(<matrix>, "dgeMatrix") is deprecated since Matrix 1.5-0;
#14 opened Oct 1, 2022 by luohaohao
8
The devtools::install_github("YosefLab/VISION") need package phanghorn but not the package found in CRAN
#11 opened Jun 16, 2022 by honghh2018
gsva method in sc.metabolism.Seurat
#10 opened Apr 25, 2022 by hjames1
how to handle large dataset(>65000 cells) in scMetabolism?
#7 opened Jan 26, 2022 by ybyOxidant
5
BoxPlot.metabolism issue, obj not in function code
#2 opened Jul 28, 2021 by msalaciak
5
ProTip! Add no:assignee to see everything that’s not assigned.