Skip to content

Issues: bigbio/quantms

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

58 Open 145 Closed
58 Open 145 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Error ms2rescore in big dataset for one run. bug Something isn't working
#447 opened Nov 25, 2024 by ypriverol
Support for timsTOF data enhancement New feature or request question Further information is requested
#440 opened Nov 17, 2024 by daichengxin
@ypriverol @timosachsenberg
@jpfeuffer @daichengxin
7
Include newest DIA-NN version (1.9.2) enhancement New feature or request
#439 opened Nov 15, 2024 by lcynwoods
1
7
Cleanup module configs and decide on default output files enhancement New feature or request high-priority
#434 opened Nov 5, 2024 by jpfeuffer
@ypriverol @jpfeuffer @daichengxin
ProteomicsLFQ memory consumed bug Something isn't working
#432 opened Oct 18, 2024 by daichengxin
@timosachsenberg @jpfeuffer
12
Add support or warnings (and tests) for edge cases (extension case, single files) bug Something isn't working
#431 opened Oct 18, 2024 by NikoHensley
43
Support for .dia file format in quantms pipeline enhancement New feature or request
#430 opened Oct 16, 2024 by hosseinvk
3
Add new rescoring features to our overview graphics
#428 opened Oct 14, 2024 by jpfeuffer
1
1
mztab export fails for particular dataset from user. bug Something isn't working
#427 opened Oct 9, 2024 by ypriverol
@daichengxin
bug in quantms related with parquet and SDRF-pipelines bug Something isn't working
#425 opened Oct 6, 2024 by ypriverol
@ypriverol
1
OpenMS and frequently mass shifts in Unimod enhancement New feature or request
#411 opened Aug 20, 2024 by ypriverol
12
Benchmarking of the id dda workflow (ms2rescore, percolator, SNR) enhancement New feature or request
#410 opened Aug 16, 2024 by ypriverol
@jpfeuffer @daichengxin
13
First Tasks for of improvements of OpenMS and quantms enhancement New feature or request research-projects
#393 opened Jul 31, 2024 by ypriverol
1 of 3 tasks
@ypriverol @timosachsenberg @MaLLLiYA
2
Comet new version has been released Comet v2024.01.0 enhancement New feature or request
#371 opened May 7, 2024 by ypriverol
3 tasks
@ypriverol @timosachsenberg @daichengxin
2
the charge min and max and missclevages are sometimes not working bug Something isn't working
#364 opened Mar 25, 2024 by ypriverol
@ypriverol @timosachsenberg
@jpfeuffer @daichengxin
3
Defining more enzymes in OpenMS Comet adaptor enhancement New feature or request
#354 opened Feb 22, 2024 by ypriverol
@ypriverol
11
Open-search with quantms, use cases and workflow documentation Improvements or additions to documentation enhancement New feature or request high-priority open-search sage-support
#345 opened Jan 18, 2024 by ypriverol
8 tasks
@daichengxin
1
Test the impact and how the parameter num_hits works documentation Improvements or additions to documentation enhancement New feature or request high-priority
#344 opened Jan 16, 2024 by ypriverol
@ypriverol @daichengxin
4
Bug with ConsensusID bug Something isn't working low-priority
#343 opened Jan 16, 2024 by ypriverol
@jpfeuffer
8
Big datasets more than 200 GB mztab size are not supported. bug Something isn't working high-priority
#342 opened Jan 16, 2024 by ypriverol
@daichengxin
We should dynamically configure some of the steps depending of the experiment size. bug Something isn't working enhancement New feature or request high-priority
#340 opened Jan 12, 2024 by ypriverol
3 tasks
@ypriverol @daichengxin
2
Support for Phosphoproteomics datasets. documentation Improvements or additions to documentation enhancement New feature or request high-priority
#334 opened Jan 9, 2024 by ypriverol
10 tasks
@ypriverol
Plasma data LFQ failing bug Something isn't working
#332 opened Dec 24, 2023 by ypriverol
@timosachsenberg @jpfeuffer
1
DIA-NN - automated handling of challenging data enhancement New feature or request
#330 opened Dec 18, 2023 by michaelsteidel86
2
SAGE error in Big dataset TMT bug Something isn't working
#329 opened Dec 9, 2023 by ypriverol
@ypriverol @timosachsenberg @daichengxin
11
ProTip! Add no:assignee to see everything that’s not assigned.