Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

Absolute quantification package based on quantms.io

Set of config files for species, taxonomies, etc

A python library with scripts and helpers classes for quantms workflow

The proteomics quantification format, extending mzTab for large scale datasets.

DIANN docker container based on the linux version from DIANN

Incremental clustesting pipeline from quantms data.

A library for QC report based on MultiQC framework

Hail variant annotation toolkit

A repository to convert SDRF proteomics files into pipelines config files