Repositories list

• release-verifier-lib

  Public
  A library of common functions for verifying release steps have run successfully

  Java

  •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

• PathwayBrowser

  Public
  TypeScript

  •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

• content-service

  Public
  The new Reactome REST API to access the data

  Java

  •5•9•1•1•Updated Jan 6, 2025Jan 6, 2025

• graph-add-links

  Public
  Java

  •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

• reactome_chatbot

  Public
  This is Reactomes chatbot to its database and search index

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Dec 24, 2024Dec 24, 2024

• Pathway-Exchange

  Public
  Pathway Exchange Code Repository

  Java

  •1•0•2•0•Updated Dec 24, 2024Dec 24, 2024

• release-download-directory

  Public
  Data-release-pipeline: Generation of files for the Reactome website download directory

  releasedata-release-pipelinemysql-release

  Java

  •1•0•10•1•Updated Dec 20, 2024Dec 20, 2024

• pwp-browser

  Public
  A tool for visualising and interacting with pathways data

  Java

  •7•10•0•0•Updated Dec 20, 2024Dec 20, 2024

• graph-core

  Public
  Models the Reactome knowledgebase into a interconnected graph

  Java

  •7•17•1•0•Updated Dec 20, 2024Dec 20, 2024

• release_gocam

  Public
  This pipeline generates go-cam ttl files from biopax and validates them

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• fireworks-layout

  Public
  Custom radial layout algorithm to visualise Reactome pathways in a space-filling graph

  visualisationradial-layoutpathways+ 2pathways-overviewreactome-pathway

  Java

  •3•1•1•1•Updated Dec 13, 2024Dec 13, 2024

• data-content

  Public
  Java

  •2•1•0•0•Updated Dec 11, 2024Dec 11, 2024

• release-jenkins-utils

  Public
  Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release

  releasedata-release-pipeline

  Groovy

  •1•0•5•0•Updated Dec 11, 2024Dec 11, 2024

• release-data-exporter

  Public
  Data-release-pipeline: Data exports for submission to NCBI, UCSC, and Europe PMC

  exporterreleaseneo4j-release+ 1data-release-pipeline

  Java

  •0•1•2•0•Updated Dec 10, 2024Dec 10, 2024

• icon-validator

  Public
  Validate the structure and values of icon files

  Java

  •1•0•0•2•Updated Dec 6, 2024Dec 6, 2024

• release-orthopairs

  Public
  Data-release-pipeline: Retrieval of homology data (human to other species) from PANTHER (http://www.pantherdb.org/)

  releasedata-release-pipeline

  Java

  •0•0•2•1•Updated Dec 4, 2024Dec 4, 2024

• release-update-stable-ids

  Public
  Data-release-pipeline: Updates stable identifiers of manually curated instances

  releasedata-release-pipelinemysql-release

  Java

  •0•0•1•1•Updated Dec 4, 2024Dec 4, 2024

• release-update-dois

  Public
  Data-release-pipeline: Updates DOIs of pathways that were updated significantly between releases (these pathways will be tagged as needing a value in their doi attribute)

  releasedata-release-pipelinemysql-release

  Java

  •0•1•0•0•Updated Dec 2, 2024Dec 2, 2024

• interaction-exporter

  Public
  Exports molecular interactions inferred from Reactome content

  Java

  •1•5•0•2•Updated Nov 28, 2024Nov 28, 2024

• sbml-exporter

  Public
  Java

  •1•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• data-export

  Public
  Creates the files to be placed in the download section

  Java

  •2•2•2•1•Updated Nov 27, 2024Nov 27, 2024

• diagram-converter

  Public
  Generates a set of JSON files to be consumed by the Diagram Viewer

  Java

  •3•1•0•1•Updated Nov 27, 2024Nov 27, 2024

• ReactomeGSA

  Public
  R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis

  R

  •

  Other

  •4•22•21•1•Updated Nov 27, 2024Nov 27, 2024

• statistics-generator

  Public
  Cypher queries to generate automatically release statistics

  R

  •

  MIT License

  •0•1•2•0•Updated Nov 27, 2024Nov 27, 2024

• biomodels-mapper

  Public
  Mapping BioModels to Reactome using analysis results

  Java

  •0•3•0•2•Updated Nov 27, 2024Nov 27, 2024

• analysis-core

  Public
  Pathway enrichment and expression analysis as well as species comparison tool

  Java

  •6•3•1•0•Updated Nov 25, 2024Nov 25, 2024

• CuratorTool

  Public
  The Reactome Java API for the relational database and the Curator Tool

  Java

  •7•3•11•5•Updated Nov 24, 2024Nov 24, 2024

• search-indexer

  Public
  Java

  •3•0•0•1•Updated Nov 13, 2024Nov 13, 2024

• pwp-diagram

  Public
  GWT widget to visualise Reactome pathways

  Java

  •7•5•0•1•Updated Nov 12, 2024Nov 12, 2024

• search-core

  Public
  Java

  •2•1•0•0•Updated Nov 6, 2024Nov 6, 2024