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38 Open 16 Closed
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Issues list

Add documentation to tem_tutorial.ipynb for simSPI/path_config.yaml documentation Improvements or additions to documentation
#131 opened Jun 24, 2022 by geoffwoollard
1
@geoffwoollard
3
Reduce the boilerplate code in test_notebooks.py
#130 opened May 12, 2022 by bogdantoader
@bogdantoader
1
Remove .pbd data that takes up space and download on the fly from osf for tests and notebooks
#129 opened May 12, 2022 by ninamiolane
Add Colab links to notebooks
#128 opened May 12, 2022 by ninamiolane
Remove dryrun test - speedup
#126 opened May 11, 2022 by fredericpoitevin
@fredericpoitevin
Projection tests?
#123 opened May 10, 2022 by lederman
Some tests fail locally because of the "/work/" absolute path
#120 opened May 7, 2022 by bogdantoader
@fredericpoitevin
1
Change config to linear simulator: from pickle to yml
#118 opened May 6, 2022 by ninamiolane
Make general latent space distribution metadata parser generator bug Something isn't working
#115 opened May 6, 2022 by sonyahanson
Implement a tomographic backprojection module
#111 opened May 6, 2022 by fredericpoitevin
Simulate spliceosomes' micrographs with the TEM simulator
#110 opened May 4, 2022 by ninamiolane
4 tasks
PIMS - Hackathon
@axel-levy
Simulate ribosomes' micrographs with the TEM simulator
#109 opened May 4, 2022 by ninamiolane
4 tasks
PIMS - Hackathon
Simulate Gaba-B proteins' micrographs with the TEM simulator
#108 opened May 4, 2022 by ninamiolane
4 tasks
PIMS - Hackathon
Write a notebook that simulates cryoEM images with the linear simulator
#107 opened May 4, 2022 by ninamiolane
3 tasks
PIMS - Hackathon
@bogdantoader
Organize simSPI's notebooks
#105 opened May 2, 2022 by ninamiolane
10 tasks
PIMS - Hackathon
@sonyahanson
5
Implement new noise models
#104 opened Apr 29, 2022 by ninamiolane
9 tasks
PIMS - Hackathon
Implement Shift in Image Space (Translation)
#103 opened Apr 29, 2022 by ninamiolane
9 tasks
PIMS - Hackathon
1
Implement Projector in Fourier Space (Slicing)
#102 opened Apr 29, 2022 by ninamiolane
8 tasks
PIMS - Hackathon
@mbrubake @lederman
1
Building simSPI container workflow fails due to size limit.
#98 opened Apr 6, 2022 by fredericpoitevin
@fredericpoitevin
2
TEM Simulator docs on Euler angle convention documentation Improvements or additions to documentation
#97 opened Apr 6, 2022 by geoffwoollard
Improve containerization experience bug Something isn't working
#93 opened Mar 25, 2022 by fredericpoitevin
@fredericpoitevin
TEMsimulator output format compatibility enhancement New feature or request
#90 opened Mar 18, 2022 by fredericpoitevin
1
Add some log information when processes are running enhancement New feature or request
#89 opened Mar 18, 2022 by fredericpoitevin
TEM : Refactor "no of samples/microgaphs" to "no of particles" enhancement New feature or request
#88 opened Mar 18, 2022 by arjunsingh3600
Docker image fails to update configuration files (.yaml) on push, workaround needed.
#84 opened Mar 10, 2022 by calhep
@fredericpoitevin @arjunsingh3600
3
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