EMERALD v1.2.1

• Fixed some compiling issues

EMERALD v1.2.0

• EMERALD now requires a mandatory output file argument and distinguishes between logs (stdout) and safety window output (output file)
• Improved log output and README.md

EMERALD v1.1.0

• Added new option -m, --windowmerge
• Updated README.md

EMERALD v1.0.1

Fixed --reference argument (selection of representative sequence)

EMERALD v1.0.0

Explore the suboptimal space with features including:

• control the length of the safety windows ( $\alpha$ parameter) and control the size of the suboptimal space ( $\Delta$ parameter)
• use a custom substitution matrix (by default: BLOSUM62) and affine-linear gap score
• approximate large integers with floats for gain of computational speed but loss of accurate output
• use multi threading (only use as many threads as
• select a custom representative sequence

Binaries available for Linux and Mac OS Silicon