EMERALD v1.0.0

Explore the suboptimal space with features including:

• control the length of the safety windows ( $\alpha$ parameter) and control the size of the suboptimal space ( $\Delta$ parameter)
• use a custom substitution matrix (by default: BLOSUM62) and affine-linear gap score
• approximate large integers with floats for gain of computational speed but loss of accurate output
• use multi threading (only use as many threads as
• select a custom representative sequence

Binaries available for Linux and Mac OS Silicon