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23 Open 60 Closed
23 Open 60 Closed
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Issues list

Do Biolink category assignment to nodes here (rather than in PHENIO)
#157 opened Nov 21, 2024 by caufieldjh
1
Always capture the ontology relation as original_predicate
#154 opened Aug 16, 2024 by kevinschaper
Use CURIE as name when name is not available
#153 opened Aug 1, 2024 by caufieldjh
URLs to KGX TSV tar.gz files in two builds are 404
#132 opened Jan 24, 2024 by justaddcoffee
1
Synchronize with semsql build (i.e., do it here)
#113 opened Aug 7, 2023 by caufieldjh
Invalid predicates
#103 opened May 19, 2023 by kevinschaper
2
Node categories
#95 opened Mar 1, 2023 by kevinschaper
10
Expand node properties
#90 opened Feb 1, 2023 by kevinschaper
4
Missing edge categories?
#88 opened Jan 30, 2023 by caufieldjh
1 of 3 tasks
6
Nodes categorized as Occurrent
#86 opened Dec 15, 2022 by caufieldjh
Compressed graph incorrectly includes relative local path
#77 opened Nov 4, 2022 by caufieldjh
Include WBbt & FBbt anatomy ontologies
#64 opened Sep 15, 2022 by kevinschaper
7
More ZFA nodes
#57 opened Jun 29, 2022 by kevinschaper
2
Odd objects in ZP has_part edges
#56 opened Jun 28, 2022 by kevinschaper
4
define workflow for feeding new HP-MP link predictions to Nico et al for manual curation/inspection, and incorporation back into Phenio
#55 opened Jun 24, 2022 by justaddcoffee
6
Question about graph embedding spaces
#53 opened Jun 19, 2022 by matentzn
8
Add more subq patterns during Phenio transform
#50 opened Jun 10, 2022 by caufieldjh
1
How is Upheno being used in KG-Phenio?
#40 opened May 23, 2022 by caufieldjh
5
Scheduled NEAT run fails due to ~~ValueError~~ KeyError when attempting to load graph file(s)
#31 opened May 3, 2022 by caufieldjh
1
8
Implement GNN for MP-HP link prediction task in Embiggen
#20 opened Apr 11, 2022 by justaddcoffee
Some gold standard phenotype nodes are not present in the merged KG
#18 opened Mar 28, 2022 by caufieldjh
5
Generate and add function for ingesting SSSOM mappings
#13 opened Mar 24, 2022 by caufieldjh
3 tasks
logistic regression (baseline)
#11 opened Mar 11, 2022 by justaddcoffee
ProTip! Exclude everything labeled bug with -label:bug.