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55 Open 18 Closed
55 Open 18 Closed
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Issues list

Calling variants with frequency lower than 1%
#81 opened Oct 25, 2024 by fa-vio
Is there any filtering required on Gemini output?
#80 opened Mar 14, 2024 by BrettLiddell
2
Confused with the last version releases
#79 opened Feb 20, 2024 by Manuel-DominguezCBG
3
How to limit chr to 1-22,XY?
#76 opened Oct 30, 2023 by hfl112
1
Can I disable the SB flag when not used?
#75 opened Sep 26, 2023 by Manuel-DominguezCBG
1
WRONG VF FOR LOW FREQUENCY VARIANTS
#74 opened Jul 4, 2023 by AriadnaColmeneroCobo
1
Read depth
#73 opened Aug 19, 2022 by ad2n15
Scylla taking a very long time to process WES data / getting stuck
#72 opened Jul 8, 2022 by fmazzarotto
1
Creating a GenomeSize.xml for a soybean genome
#69 opened Apr 8, 2022 by brunabavelino
3
Pisces has different dp and no call？
#68 opened Mar 7, 2022 by user-tq
1
“No usable version of the libssl was found” on Linux
#67 opened Nov 30, 2021 by HEKntg
1
Can Pisces set the maximum coverage/sequence depth for SNV calling ?
#66 opened Jun 24, 2021 by ltongyu
1
where can i download Scylla ?
#65 opened Apr 15, 2021 by worker000000
1
What's the difference between --collapse and --crushvcf options of Pisces
#62 opened Mar 1, 2021 by ShannonDaddy
2
Get forward and reverse reads supportting the allele depth(refand alt)，respectively
#61 opened Feb 3, 2021 by diushiguzhi
1
Gemini 5.3.0.0 Nullable object Error
#60 opened Jan 20, 2021 by ShannonDaddy
1
just FYI, for those who want to develop or debug Pisces on Linux..
#58 opened Dec 29, 2020 by tamsen
5
Does Pisces recognize the base quality score from PacBio HiFi reads?
#57 opened Dec 8, 2020 by turningA
2
How the strand bias and R3x6 filter works in illumina platform?
#56 opened Nov 17, 2020 by N3ha247
1
Gemini 5.2.11 does not complete - errors for different chromosomes
#55 opened Oct 13, 2020 by kotliary
4
get forward and reverse support counts for Scylla merged variants
#54 opened Aug 24, 2020 by argoat
1
Running picard sam format converter for batch sample
#53 opened Jul 17, 2020 by zahraj242
1
error running GATK workflow on local machine
#52 opened Jul 17, 2020 by zahraj242
clustered snps can't be merged by scylla
#51 opened Jun 30, 2020 by ShannonDaddy
2
Hi, how to deal with multiple variants in a small region
#50 opened May 22, 2020 by ShannonDaddy
5
ProTip! Adding no:label will show everything without a label.