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Can Pisces set the maximum coverage/sequence depth for SNV calling ? #66

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ltongyu opened this issue Jun 24, 2021 · 1 comment

ltongyu commented Jun 24, 2021

Hi,
My sequencing data is amplicon sequencing that some regions got excessive coverage. I wonder if I can set a maxi coverage in Pisces.
Thank you!

Contributor

tamsen commented Feb 16, 2022

Oh, we dont have that. It would be very easy to change for you. Can you raise it as an issue in the new pisces home?

see

https://github.com/tamsen/Pisces
https://github.com/tamsen/Pisces/wiki/Pisces-5.2.10-Supported-Options

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