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@Bigelow-eSCG-tutorials

Bigelow Single Cell Genomics

Tutorials focused on Bioinformatics of Microbial Single Cells

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  1. day2_recruitment day2_recruitment Public

    metagenomic read recruitment discussion and tutorial

    Jupyter Notebook 2 1

  2. Day4_anvio Day4_anvio Public

    Integrate and analyze SCG data in anvi'o

    1

  3. day1_sag_pipeline day1_sag_pipeline Public

    intro to sag generation and qc

    Jupyter Notebook 1

  4. day3_metabolism day3_metabolism Public

    discussion and tutorial for genomic analysis of metabolism with sags

    HTML 1 1

  5. day2_pm_classifier day2_pm_classifier Public

    tutorial on the GORG-classifier

    HTML 1 1

  6. course_notes course_notes Public

    notes and scripts related to the Bigelow-SCG-Course

Repositories

Showing 10 of 14 repositories
  • day3_virus_tutorial Public

    Tutorial for identifying viral DNA within microbial single amplified genomic data.

    Bigelow-eSCG-tutorials/day3_virus_tutorial’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Apr 4, 2024
  • day2_pm_classifier Public

    tutorial on the GORG-classifier

    Bigelow-eSCG-tutorials/day2_pm_classifier’s past year of commit activity
    HTML 1 1 0 0 Updated Apr 4, 2024
  • day2_recruitment Public

    metagenomic read recruitment discussion and tutorial

    Bigelow-eSCG-tutorials/day2_recruitment’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Apr 4, 2024
  • day1_sag_pipeline Public

    intro to sag generation and qc

    Bigelow-eSCG-tutorials/day1_sag_pipeline’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 3, 2024
  • Day4_anvio Public

    Integrate and analyze SCG data in anvi'o

    Bigelow-eSCG-tutorials/Day4_anvio’s past year of commit activity
    1 0 0 0 Updated Apr 3, 2024
  • day3_metabolism Public

    discussion and tutorial for genomic analysis of metabolism with sags

    Bigelow-eSCG-tutorials/day3_metabolism’s past year of commit activity
    HTML 1 1 0 0 Updated Apr 3, 2024
  • Day1AM_intro_to_jupyterhub Public
    Bigelow-eSCG-tutorials/Day1AM_intro_to_jupyterhub’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 3, 2024
  • day1_overview_-_QC Public

    SCG otuput files for general QC

    Bigelow-eSCG-tutorials/day1_overview_-_QC’s past year of commit activity
    0 0 0 0 Updated Apr 3, 2024
  • course_notes Public

    notes and scripts related to the Bigelow-SCG-Course

    Bigelow-eSCG-tutorials/course_notes’s past year of commit activity
    0 0 0 0 Updated Apr 8, 2022
  • Day3PM_GORG-classifier Public
    Bigelow-eSCG-tutorials/Day3PM_GORG-classifier’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 6, 2022
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