Repositories list

• day3_virus_tutorial

  Public
  Tutorial for identifying viral DNA within microbial single amplified genomic data.

  Jupyter Notebook

  •1•0•0•0•Updated Apr 4, 2024Apr 4, 2024

• day2_pm_classifier

  Public
  tutorial on the GORG-classifier

  HTML

  •1•1•0•0•Updated Apr 4, 2024Apr 4, 2024

• day2_recruitment

  Public
  metagenomic read recruitment discussion and tutorial

  Jupyter Notebook

  •1•2•0•0•Updated Apr 4, 2024Apr 4, 2024

• day1_sag_pipeline

  Public
  intro to sag generation and qc

  Jupyter Notebook

  •0•1•0•0•Updated Apr 3, 2024Apr 3, 2024

• Day4_anvio

  Public
  Integrate and analyze SCG data in anvi'o

  0•1•0•0•Updated Apr 3, 2024Apr 3, 2024

• day3_metabolism

  Public
  discussion and tutorial for genomic analysis of metabolism with sags

  HTML

  •1•1•0•0•Updated Apr 3, 2024Apr 3, 2024

• Day1AM_intro_to_jupyterhub

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

• day1_overview_-_QC

  Public
  SCG otuput files for general QC

  0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

• course_notes

  Public
  notes and scripts related to the Bigelow-SCG-Course

  0•0•0•0•Updated Apr 8, 2022Apr 8, 2022

• Day3PM_GORG-classifier

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 6, 2022Apr 6, 2022

• Day3AM_read_recruitment

  Public
  Jupyter Notebook

  •2•0•0•0•Updated Apr 6, 2022Apr 6, 2022

• Day2PM_annotations

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Apr 6, 2022Apr 6, 2022

• Day1PM_SCG_data_intro

  Public
  Introduction to SCG Data

  Jupyter Notebook

  •0•0•0•0•Updated Apr 5, 2022Apr 5, 2022

• day2_am_taxonomic_classification

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 5, 2022Apr 5, 2022