Discussions

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  Hierarchical clustering

  meyer-sp asked Nov 6, 2024 in Q&A · Unanswered

  

  

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  Why the results are different between R and GSEApy

  sinorockie asked Oct 24, 2024 in Q&A · Unanswered

  

  

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  Issue with mitochondrial gene enrichment?

  johanneswilbertz asked Oct 2, 2024 in Q&A · Unanswered

  

  

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  pre-process of expression data for GSEA module

  qczhao92 asked Sep 6, 2024 in Q&A · Answered

  

  

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  Is FDR used in GSEA Benjamini–Hochberg where alpha is 0.05?

  BroMynn asked May 2, 2024 in Q&A · Answered

  

  

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  If, how, and where are gene name synonyms/gene identifyers handled when using gp.prerank() ?

  RobStrasser asked May 6, 2024 in Q&A · Unanswered

  

  

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  Anyone get GSEApy to work in AWS Sagemaker?

  xiaofwu asked Apr 18, 2024 in Q&A · Unanswered

  

  

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  Installation error due to numpy

  kowshikasarker asked Mar 27, 2024 in Q&A · Closed · Answered

  

  

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  Equivalence of GSEApy and Broad GSEA with phenotype permutations

  bobzimmermann-D4C asked Mar 7, 2024 in Q&A · Answered

  

  

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  error in pre rank: ValueError: Length mismatch: Expected axis has 3 elements, new values have 2 elements

  jimena2 asked Feb 23, 2024 in Q&A · Unanswered

  

  

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  Technical Questions

  Bcopeland64 asked Mar 15, 2021 in Q&A · Unanswered

  

  

  

  

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  meaning of gene % prerank output

  idriskb asked Jun 7, 2023 in Q&A · Answered

  

  

  

  

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  Difference in the output when I upload .gmt file

  pushtimehta asked Sep 28, 2023 in Q&A · Unanswered

  

  

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  Duplicated ranking values in gsea?

  BelanaZ asked Jul 21, 2023 in Q&A · Unanswered

  

  

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  'Prerank' object has no attribute '_results'

  luorongxin-yuan asked Jul 16, 2023 in Q&A · Answered

  

  

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  Multiple GSEA Plots

  kirillkrs asked May 22, 2023 in Q&A · Answered

  

  

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  For the GSEApy ssGSEA module, why should all genes in the gene sets be present in the gene expression table?

  joshscurll asked Apr 27, 2023 in Q&A · Answered

  

  

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  Parsing continuous time-series CLS file format

  kebonly started Apr 27, 2023 in Ideas

  

  

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  What is the difference between enr.results and enr.res2d?

  zhoutianrui-tongji asked Apr 8, 2023 in Q&A · Answered

  

  

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  Matplotlib support failed

  zhoutianrui-tongji asked Apr 8, 2023 in Q&A · Unanswered

  

  

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  Error when trying to get log fold changes

  hbaker2 asked Jan 13, 2023 in Q&A · Unanswered

  

  

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  Unusual error when running gseapy.prerank

  hbaker2 asked Jan 9, 2023 in Q&A · Unanswered

  

  

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  How to bring own custom background to gseapy

  Cher-HAN asked Dec 1, 2022 in Q&A · Unanswered

  

  

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  ModuleNotFoundError while importing gseapy

  RainHan2001 asked Aug 27, 2022 in Q&A · Answered

  

  

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  Help with understanding the ssGSEA computations

  erolkavvas asked Nov 14, 2022 in Q&A · Answered

  

  

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