Technical Questions #115
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Yes. Go ahead. But I might rely late. Sorry for that |
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Hi! I did a single test with a single custom gene set in GSEAPY prerank and my FWER p-value is lower than FDR q-value and p-value. How can this result be interpreted? Could you describe how is fwer p-value calculated, please? Is it one-sided? |
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The FWERp and FDRq both use NES null distribution, while p-value uses ES null distribution. II believe that relying solely on a single test for controlling False Discovery Rate (FDR) or Family-Wise Error Rate (FWER) may not be adequate in your case. |
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Could you explain me, what is the difference in FDRq and FWERq calculations in the case with a single gene set, please? |
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Hello All,
I am a first-time user of the gseapy module. I sometimes have technical questions about the usage of the library and troubleshooting code. Is it okay to ask these questions here? Thanks
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