SNP-free RNA editing Identification Toolkit
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Updated
Jan 4, 2024 - Python
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rna-editing
Here are 9 public repositories matching this topic...
Clair3-RNA - a long-read small variant caller for RNA sequencing data
rna-seq
deep-learning
nanopore
rna
variant-calling
rna-editing
rna-seq-pipeline
ont
long-read-sequencing
pacbio-iso-seq
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Updated
Nov 21, 2024 - Python
Deepred-Mt is a novel method based on deep neural networks to predict C-to-U editing sites in angiosperm mitochondrial RNA.
genome
autoencoder
rna
convolutional-neural-networks
convolutional-autoencoder
embedding
rna-editing
mitochondria
posttranslational-modification
rna-sequence
angiosperms
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Aug 5, 2024 - Jupyter Notebook
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
bioinformatics
quality-control
pipeline
singularity
alternative-splicing-analysis
transcriptomics
oxford-nanopore
rna-editing
differential-expression-analysis
snakemake-pipeline
novel-transcripts
rna-modifications
direct-rna-sequencing
known-transcripts
polya-tail-length-estimation
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Updated
Feb 6, 2024 - Python
Trypanosome RNA Editing Alignment Tool
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Jan 16, 2024 - R
This repository contains the script written for PPR assembly automation with an OT2 system.
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Updated
May 19, 2021 - Jupyter Notebook
Mapping of RNAseq data on reference genome using Hisat2 for reduced mismatch penalties
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Updated
Dec 2, 2020 - Shell
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