MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data

Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia

NormalizeQuantiles.jl implements quantile normalization

Collection of gene expression datasets

PHet: Heterogeneity-Preserving Discriminative Feature Selection for Subtype Discovery

Acute Myeloid Leukemia Microarray Analysis

An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))

Source code and description of GCSscore Package

Tumor Identification Based on Machine Learning Analysis of Microarray Data (2024-2025)

A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.

Analysis of long continuous stretches of homozygosity of the human genome.

Nextcast: a software suite to analyse and model toxicogenomics data

This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.

In this project, we designed a pipeline to identify new biomarkers with microarray analysis. (AI & Intelligent Medicine, Spring 2022).

Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets

Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University

Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more

Data analysis and integration of several transcriptomics studies to uncover genes and co-expression networks associated with the ageing process.

Visualization of co-expression networks

The Trypanosoma cruzi Antigen and Epitope Atlas: deep characterization of individual antibody specificities in human Chagas Disease patients across the Americas