remove old reference

settylab · Nov 28, 2023 · f4df4e1 · f4df4e1
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diff --git a/.gitignore b/.gitignore
@@ -8,3 +8,4 @@ palantir.egg-info/
 notebooks/testing.ipynb
 dist/
 .vscode/
+data/
diff --git a/notebooks/manuscript_data.ipynb b/notebooks/manuscript_data.ipynb
@@ -26,9 +26,6 @@
     "9. `.uns['palantir_branch_probs_cell_types']`: Labels for Palantir branch probabilities.\n",
     "10. `.uns['ct_colors']`: Color codes for cell types, as used in the manuscript.\n",
     "11. `.uns['cluster_colors']`: Color codes for cell clusters, as used in the manuscript.\n",
-    "12. `.varm['mast_diff_res_pval']`: MAST algorithm p-values for differential expression analysis across clusters.\n",
-    "13. `.varm['mast_diff_res_statistic']`: Statistical values from MAST for differential expression.\n",
-    "14. `.uns['mast_diff_res_columns']`: Column names for MAST differential expression results.\n",
     "\n",
     "## Python Code for Data Access:"
    ]
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@@ Expand Up / @@ -8,3 +8,4 @@ palantir.egg-info/ @@
     notebooks/testing.ipynb
     dist/
     .vscode/
+    data/