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1. Mellon Mellon Public

   Non-parametric density inference for single-cell analysis.

   Jupyter Notebook 64 3

2. atac_metacell_utilities atac_metacell_utilities Public

   Snakemake pipeline for scATAC metacell utilities such as primed and lineage specific scores, chromVAR, in-silico ChIP

   Python 4

3. 2for1separator 2for1separator Public

   Deconvolve CUT&Tag 2for1 data.

   Python 1

4. Harmony Harmony Public

   Forked from dpeerlab/Harmony

   Harmony framework for connecting scRNA-seq data from discrete time points

   Jupyter Notebook

5. Palantir Palantir Public

   Forked from dpeerlab/Palantir

   Single cell trajectory detection

   Jupyter Notebook

6. SEACells SEACells Public

   Forked from dpeerlab/SEACells

   SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data

   Jupyter Notebook