Pipelines links for Pretext and Oatk

markdown/resources/tools.md

@@ -40,6 +40,8 @@ Genomes on a Tree (GoaT), an Elasticsearch-powered datastore and search index fo
 
 Developed for _de novo_ assembly of complex plant organelle genomes using PacBio HiFi data, [Oatk](https://github.com/c-zhou/oatk) can also be used to assemble other, simpler organelle genomes such as animal mitochondria. From whole genome sequencing data input, Oatk's tools produce annotation (using profile HMMs from [OatkDB](https://github.com/c-zhou/OatkDB.git)) and cirularised graph assemblies of plastid and mitochondrial genomes.
 
+**Pipelines:** [genomeassembly](/genomeassembly)
+
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 ## Pretext
@@ -54,6 +56,8 @@ Pretext is a suite of tools used to curate the chromosome level structure of lon
 
 - [PretextSnapshot](https://github.com/sanger-tol/PretextSnapshot) - Extracts Hi-C contact map images from Pretext map files.
 
+**Pipelines:** [genomeassembly](/genomeassembly) | [treeval](/treeval)
+
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 ## AGP / TPF Utilities