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Merge pull request #26 from sanger-tol/fixes_before_release
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Fixes before release
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ksenia-krasheninnikova authored Dec 7, 2023
2 parents cf477a4 + b3eab6e commit 48c9506
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Showing 2 changed files with 13 additions and 33 deletions.
28 changes: 13 additions & 15 deletions assets/test_gfLaeSulp1.yaml
Original file line number Diff line number Diff line change
@@ -1,18 +1,16 @@
samples:
- id: gfLaeSulp1
assembly:
primary: /lustre/scratch124/tol/projects/darwin/data/fungi/Laetiporus_sulphureus/working/gfLaeSulp1.hifiasm.20210610/gfLaeSulp1.p_ctg.fa.gz
haplotigs: /lustre/scratch124/tol/projects/darwin/data/fungi/Laetiporus_sulphureus/working/gfLaeSulp1.hifiasm.20210610/gfLaeSulp1.a_ctg.fa.gz
illumina_10X:
reads: /lustre/scratch124/tol/projects/darwin/data/fungi/Laetiporus_sulphureus/genomic_data/gfLaeSulp1/10x/
pacbio:
reads:
- reads: /lustre/scratch124/tol/projects/darwin/data/fungi/Laetiporus_sulphureus/genomic_data/gfLaeSulp1/pacbio/fasta/m64229e_210602_121910.ccs.bc1020_BAK8B_OA--bc1020_BAK8B_OA.filtered.fasta.gz
kmer_pref: /lustre/scratch124/tol/projects/darwin/data/fungi/Laetiporus_sulphureus/genomic_data/gfLaeSulp1/pacbio/kmer/k31/gfLaeSulp1.k31
dataset:
id: gfLaeSulp1
pacbio:
reads:
- reads: /lustre/scratch124/tol/projects/darwin/data/fungi/Laetiporus_sulphureus/genomic_data/gfLaeSulp1/pacbio/fasta/m64229e_210602_121910.ccs.bc1020_BAK8B_OA--bc1020_BAK8B_OA.filtered.fasta.gz
HiC:
reads:
- reads: /lustre/scratch124/tol/projects/darwin/data/fungi/Laetiporus_sulphureus/genomic_data/gfLaeSulp1/hic-arima2/40063_3#5.cram
arima_motif: GATC,GANTC,CTNAG,TTAA
busco:
lineages_path: /lustre/scratch123/tol/resources/busco/v5/
lineage: fungi_odb10
hic_motif: GATC,GANTC,CTNAG,TTAA
busco:
lineages_path: /lustre/scratch123/tol/resources/busco/v5/
lineage: fungi_odb10
mito:
species: Laetiporus sulphureus
min_length: 15000
code: 4
18 changes: 0 additions & 18 deletions assets/test_gfTriCing1.yaml

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