Merge pull request #25 from sanger-tol/fixes_before_release

Update paths for full test
sanger-tol · Dec 7, 2023 · cf477a4 · cf477a4
2 parents 8a148ed + 84bd862
commit cf477a4
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Showing 2 changed files with 8 additions and 8 deletions.
diff --git a/assets/test_gsMetZobe1.yaml b/assets/test_gsMetZobe1.yaml
@@ -1,16 +1,16 @@
 dataset:
   id: gsMetZobe1
   illumina_10X:
-    reads: /lustre/scratch124/tol/projects/darwin/users/kk16/development/nextflow/gsMetZobe1/10x/
+    reads: /lustre/scratch123/tol/resources/genomeassembly/testdata/gsMetZobe1/10x/
   pacbio:
     reads:
-      - reads: /lustre/scratch124/tol/projects/darwin/users/kk16/development/nextflow/gsMetZobe1/pacbio/m64125_200823_145825.ccs.bc1019_BAK8B_OA--bc1019_BAK8B_OA.filtered.fasta.gz
+      - reads: /lustre/scratch123/tol/resources/genomeassembly/testdata/gsMetZobe1/pacbio/m64125_200823_145825.ccs.bc1019_BAK8B_OA--bc1019_BAK8B_OA.filtered.fasta.gz
   HiC:
     reads:
-      - reads: /lustre/scratch124/tol/projects/darwin/users/kk16/development/nextflow/gsMetZobe1/hic-arima/35528_4#7.cram
+      - reads: /lustre/scratch123/tol/resources/genomeassembly/testdata/gsMetZobe1/hic-arima2/35528_4#7.cram
 hic_motif: GATC,GANTC,CTNAG,TTAA
 busco:
-  lineages_path: /lustre/scratch123/tol/resources/busco/v5/
+  lineage_path: /lustre/scratch123/tol/resources/busco/v5/
   lineage: fungi_odb10
 mito:
   species: Metschnikowia zobellii

diff --git a/assets/test_iyVesGerm1.yaml b/assets/test_iyVesGerm1.yaml
@@ -1,16 +1,16 @@
 dataset:
   id: iyVesGerm1
   illumina_10X:
-    reads: /lustre/scratch124/tol/projects/darwin/users/kk16/development/nextflow/sanger-tol-genomeassembly/test/10X_iyVesGerm1
+    reads: /lustre/scratch123/tol/resources/genomeassembly/testdata/iyVesGerm1/10x
   pacbio:
     reads:
-      - reads: /lustre/scratch124/tol/projects/darwin/data/insects/Vespula_germanica/genomic_data/iyVesGerm1/pacbio/fasta/m64094_200217_145414.ccs.bc1011_BAK8A_OA--bc1011_BAK8A_OA.filtered.fasta.gz
+      - reads: /lustre/scratch123/tol/resources/genomeassembly/testdata/iyVesGerm1/pacbio/m64094_200217_145414.ccs.bc1011_BAK8A_OA--bc1011_BAK8A_OA.filtered.fasta.gz
   HiC:
     reads:
-      - reads: /lustre/scratch124/tol/projects/darwin/data/insects/Vespula_germanica/genomic_data/iyVesGerm1/hic-arima2/34957_3#2.cram
+      - reads: /lustre/scratch123/tol/resources/genomeassembly/testdata/iyVesGerm1/hic-arima2/34957_3#2.cram
 hic_motif: GATC,GANTC,CTNAG,TTAA
 busco:
-  lineages_path: /lustre/scratch123/tol/resources/busco/v5/
+  lineage_path: /lustre/scratch123/tol/resources/busco/v5/
   lineage: insecta_odb10
 mito:
   species: Vespula germanica