busco updated and patched

sanger-tol · Nov 21, 2024 · a87c43f · a87c43f
1 parent 2793130
commit a87c43f
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Showing 15 changed files with 1,472 additions and 119 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -96,8 +96,8 @@ process {
         ext.args = { 'test' in workflow.profile.tokenize(',') ?
                         // Additional configuration to speed processes up during testing.
                         // Note: BUSCO *must* see the double-quotes around the parameters
-                        '--force --metaeuk_parameters \'"-s=2"\' --metaeuk_rerun_parameters \'"-s=2"\''
-                    : '--force' }
+                        '--force --metaeuk --metaeuk_parameters \'"-s=2"\' --metaeuk_rerun_parameters \'"-s=2"\''
+                    : '--force --metaeuk'  }
     }
 
     withName: "RESTRUCTUREBUSCODIR" {

diff --git a/modules.json b/modules.json
@@ -13,13 +13,13 @@
                         ],
                         "patch": "modules/nf-core/blast/blastn/blast-blastn.diff"
                     },
-                    "busco": {
+                    "busco/busco": {
                         "branch": "master",
-                        "git_sha": "e3126f437c336c826f242842fe51769cfce0ec2d",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": [
                             "modules"
                         ],
-                        "patch": "modules/nf-core/busco/busco.diff"
+                        "patch": "modules/nf-core/busco/busco/busco-busco.diff"
                     },
                     "cat/cat": {
                         "branch": "master",

diff --git a/modules/nf-core/busco/busco.diff → modules/nf-core/busco/busco/busco-busco.diff b/modules/nf-core/busco/busco.diff → modules/nf-core/busco/busco/busco-busco.diff
diff --git a/modules/nf-core/busco/environment.yml → modules/nf-core/busco/busco/environment.yml b/modules/nf-core/busco/environment.yml → modules/nf-core/busco/busco/environment.yml
diff --git a/modules/nf-core/busco/main.nf → modules/nf-core/busco/busco/main.nf b/modules/nf-core/busco/main.nf → modules/nf-core/busco/busco/main.nf
diff --git a/modules/nf-core/busco/busco/meta.yml b/modules/nf-core/busco/busco/meta.yml