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all modules updated exc. BUSCO
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@tkchafin
tkchafin committed Nov 21, 2024
1 parent 151e154 commit 2793130
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83 changes: 60 additions & 23 deletions modules.json
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Original file line number Diff line number Diff line change
Expand Up @@ -7,100 +7,137 @@
"nf-core": {
"blast/blastn": {
"branch": "master",
"git_sha": "209e5a3e2753c5e628736a662c877c20f341ee15",
"installed_by": ["modules"],
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
],
"patch": "modules/nf-core/blast/blastn/blast-blastn.diff"
},
"busco": {
"branch": "master",
"git_sha": "e3126f437c336c826f242842fe51769cfce0ec2d",
"installed_by": ["modules"],
"installed_by": [
"modules"
],
"patch": "modules/nf-core/busco/busco.diff"
},
"cat/cat": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
"installed_by": [
"modules"
]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
"installed_by": [
"modules"
]
},
"diamond/blastp": {
"branch": "master",
"git_sha": "b29f6beb86d1d24d680277fb1a3f4de7b8b8a92c",
"installed_by": ["modules"],
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
],
"patch": "modules/nf-core/diamond/blastp/diamond-blastp.diff"
},
"diamond/blastx": {
"branch": "master",
"git_sha": "b29f6beb86d1d24d680277fb1a3f4de7b8b8a92c",
"installed_by": ["modules"],
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
],
"patch": "modules/nf-core/diamond/blastx/diamond-blastx.diff"
},
"fastawindows": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"],
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
],
"patch": "modules/nf-core/fastawindows/fastawindows.diff"
},
"gunzip": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
"installed_by": [
"modules"
]
},
"minimap2/align": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"],
"installed_by": [
"modules"
],
"patch": "modules/nf-core/minimap2/align/minimap2-align.diff"
},
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
"installed_by": [
"modules"
]
},
"pigz/compress": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
"installed_by": [
"modules"
]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
"installed_by": [
"modules"
]
},
"samtools/index": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
"installed_by": [
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]
},
"samtools/view": {
"branch": "master",
"git_sha": "669eb24fd82a9d3cb18ad0e73673ecb26827f683",
"installed_by": ["modules"]
"installed_by": [
"modules"
],
"patch": "modules/nf-core/samtools/view/samtools-view.diff"
},
"seqtk/subseq": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"],
"installed_by": [
"modules"
],
"patch": "modules/nf-core/seqtk/subseq/seqtk-subseq.diff"
},
"untar": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
"installed_by": [
"modules"
]
},
"windowmasker/mkcounts": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
"installed_by": [
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]
},
"windowmasker/ustat": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
"installed_by": [
"modules"
]
}
}
},
Expand All @@ -109,4 +146,4 @@
}
}
}
}
}
17 changes: 16 additions & 1 deletion modules/nf-core/blast/blastn/blast-blastn.diff
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4 changes: 1 addition & 3 deletions modules/nf-core/blast/blastn/environment.yml
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15 changes: 13 additions & 2 deletions modules/nf-core/blast/blastn/main.nf
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61 changes: 32 additions & 29 deletions modules/nf-core/blast/blastn/meta.yml
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6 changes: 3 additions & 3 deletions modules/nf-core/blast/blastn/tests/main.nf.test
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4 changes: 2 additions & 2 deletions modules/nf-core/blast/blastn/tests/main.nf.test.snap
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2 changes: 0 additions & 2 deletions modules/nf-core/diamond/blastp/environment.yml
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