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update demo
piranha #394: Commit f3cec7f pushed by rmcolq
November 3, 2023 10:41 23m 18s nextflow_options
November 3, 2023 10:41 23m 18s
update versions and try to make test tarball for demo data
piranha #393: Commit 30fdae6 pushed by rmcolq
November 3, 2023 10:19 19m 26s nextflow_options
November 3, 2023 10:19 19m 26s
update nextflow options
piranha #392: Commit ec6ac25 pushed by rmcolq
November 2, 2023 14:35 14m 28s nextflow_options
November 2, 2023 14:35 14m 28s
updating logging
piranha #391: Commit fa546bc pushed by aineniamh
November 2, 2023 13:49 12m 32s parsing-dev
November 2, 2023 13:49 12m 32s
Update __init__.py
piranha #390: Commit ecdca9b pushed by aineniamh
November 2, 2023 09:50 18m 28s 1.1.2
November 2, 2023 09:50 18m 28s
Update __init__.py
piranha #389: Commit ecdca9b pushed by aineniamh
November 2, 2023 09:42 19m 22s main
November 2, 2023 09:42 19m 22s
Tidying python scripts
piranha #388: Commit 55ce68b pushed by ZoeVance
October 31, 2023 15:00 19m 46s haplo_dev
October 31, 2023 15:00 19m 46s
Fixing vcf parsing bug
piranha #387: Commit 850740f pushed by ZoeVance
October 31, 2023 14:20 19m 44s haplo_dev
October 31, 2023 14:20 19m 44s
Initial script upload - no integration attempted
piranha #386: Commit 9338444 pushed by ZoeVance
October 31, 2023 13:52 20m 53s haplo_dev
October 31, 2023 13:52 20m 53s
updating report w phylo
piranha #385: Commit 403d072 pushed by aineniamh
October 30, 2023 20:25 24m 19s main
October 30, 2023 20:25 24m 19s
updating report eg to have id rather than description for flagged seq…
piranha #384: Commit 12cadd7 pushed by aineniamh
October 30, 2023 15:01 25m 57s main
October 30, 2023 15:01 25m 57s
adding bcode09
piranha #383: Commit 2a433b8 pushed by aineniamh
October 30, 2023 14:48 25m 28s main
October 30, 2023 14:48 25m 28s
Merge pull request #171 from polio-nanopore/paf-parsing
piranha #382: Commit 08f6202 pushed by aineniamh
October 30, 2023 12:32 18m 10s main
October 30, 2023 12:32 18m 10s
Paf parsing
piranha #381: Pull request #171 opened by aineniamh
October 30, 2023 12:32 19m 17s paf-parsing
October 30, 2023 12:32 19m 17s
match col to config
piranha #380: Commit 404e47c pushed by aineniamh
October 26, 2023 18:07 20m 57s paf-parsing
October 26, 2023 18:07 20m 57s
config for keys for db and today vars
piranha #379: Commit 7cff206 pushed by aineniamh
October 26, 2023 16:47 23m 25s paf-parsing
October 26, 2023 16:47 23m 25s
removing english and french specific reports
piranha #378: Commit 6ea2847 pushed by aineniamh
October 26, 2023 15:44 21m 20s paf-parsing
October 26, 2023 15:44 21m 20s
typo on english config arg
piranha #377: Commit da9431c pushed by aineniamh
October 26, 2023 15:23 25m 35s paf-parsing
October 26, 2023 15:23 25m 35s
Merge pull request #169 from polio-nanopore/paf-parsing
piranha #376: Commit 3b8507f pushed by aineniamh
October 26, 2023 14:40 25m 2s main
October 26, 2023 14:40 25m 2s
yaml parsing and dev info and citation box in report
piranha #375: Pull request #169 opened by aineniamh
October 25, 2023 12:29 17m 18s paf-parsing
October 25, 2023 12:29 17m 18s
Merge pull request #167 from polio-nanopore/paf-parsing
piranha #373: Commit 92b5363 pushed by aineniamh
October 25, 2023 10:19 24m 51s main
October 25, 2023 10:19 24m 51s
Paf parsing
piranha #372: Pull request #167 synchronize by aineniamh
October 25, 2023 10:19 17m 22s paf-parsing
October 25, 2023 10:19 17m 22s
adding aln block length to config table in report
piranha #371: Commit 70bd659 pushed by aineniamh
October 25, 2023 10:19 23m 30s paf-parsing
October 25, 2023 10:19 23m 30s
change var count annotation to call annotation
piranha #370: Commit 826c743 pushed by aineniamh
October 24, 2023 16:13 18m 12s 1.1.1
October 24, 2023 16:13 18m 12s
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