update versions and try to make test tarball for demo data

polio-nanopore · Nov 3, 2023 · 30fdae6 · 30fdae6
1 parent ec6ac25
commit 30fdae6
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Showing 7 changed files with 3 additions and 28 deletions.
diff --git a/main.nf b/main.nf
@@ -2,7 +2,7 @@ process run_piranha {
 
     publishDir "${params.out_dir}", mode: 'copy'
 
-    container "${params.wf.container}"
+    container "${params.wf.container}:${workflow.manifest.version}"
 
     input:
         path barcodes_csv

diff --git a/nextflow.config b/nextflow.config
@@ -53,7 +53,6 @@ params {
         ]
         agent = null
         container = "polionanopore/piranha"
-        container_sha = "sha256:f91fd4880a848ee287de9f6dc59566739267103f5f82de3f0f11873b35b5c78a"
     }
 }
 
@@ -65,7 +64,7 @@ manifest {
     description     = 'Polio investigation resource automating nanopore haplotype analysis.'
     mainScript      = 'main.nf'
     nextflowVersion = '>=23.04.2'
-    version         = '1.1'
+    version         = '1.1.2'
 }
 
 

diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -4,7 +4,7 @@
   "title": "polio-nanopore/piranha",
   "description": "Polio investigation resource automating nanopore haplotype analysis.",
   "url": "https://github.com/polio-nanopore/piranha",
-  "demo_url": "https://raw.githubusercontent.com/polio-nanopore/piranha/main/piranha/test/pak_run",
+  "demo_url": "https://raw.githubusercontent.com/polio-nanopore/piranha/main/piranha/test/pak_run.tar.gz",
   "type": "object",
   "definitions": {
     "input_options": {

diff --git a/piranha/test/nextflow.config b/piranha/test/nextflow.config
diff --git a/piranha/test/pak_run.tar.gz b/piranha/test/pak_run.tar.gz
diff --git a/piranha/test/supp_metadata.csv b/piranha/test/supp_metadata.csv
diff --git a/piranha/test/supp_seqs.fasta b/piranha/test/supp_seqs.fasta