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@physimals

Physimals group, University of Nottingham

The Physimals group applies inference (estimation) techniques from information engineering to biomedical data, primarily with a view to clinical application.

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  1. quantiphyse quantiphyse Public

    Application for analysis and modelling of volumetric medical imaging data

    Python 27 3

  2. hcp-asl hcp-asl Public

    ASL pipeline for the Human Connectome Project

    Python 9 4

  3. oxford_asl oxford_asl Public

    A command line tool for quantification of perfusion from ASL data

    Shell 8 7

  4. oxasl oxasl Public

    Python based ASL pipeline based on oxford_asl

    Python 5 6

  5. verbena verbena Public

    Vascular Model Based Perfusion Quantification for DSC-MRI

    Shell 3 4

  6. fabber_core fabber_core Public

    Framework for Bayesian model fitting using the Variational Bayes method and pluggable forward models

    C++ 3 5

Repositories

Showing 10 of 71 repositories
  • hcp-asl Public

    ASL pipeline for the Human Connectome Project

    physimals/hcp-asl’s past year of commit activity
    Python 9 Apache-2.0 4 4 0 Updated Nov 27, 2024
  • asl-docs Public

    Documentation for ASL tools (BASIL, oxford_asl, etc)

    physimals/asl-docs’s past year of commit activity
    Python 0 3 1 1 Updated Nov 27, 2024
  • oxasl_ve Public

    OXASL plugin for vessel-encoded ASL data

    physimals/oxasl_ve’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Nov 27, 2024
  • oxasl_optpcasl Public

    Python library for optimizing PLDs of a multi-PLD pCASL acquisition. Ported from Joe Woods' MATLAB code

    physimals/oxasl_optpcasl’s past year of commit activity
    Python 0 Apache-2.0 2 0 0 Updated Nov 27, 2024
  • oxasl_enable Public

    OXASL plugin which allows volume selection for quality improvement using the ENABLE algorithm

    physimals/oxasl_enable’s past year of commit activity
    Python 1 0 3 0 Updated Nov 27, 2024
  • tilda_asl Public

    Analysis pipeline code for ASL data from The Irish Longitudinal stuDy on Ageing

    physimals/tilda_asl’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 25, 2024
  • oxasl Public

    Python based ASL pipeline based on oxford_asl

    physimals/oxasl’s past year of commit activity
    Python 5 Apache-2.0 6 13 1 Updated Nov 11, 2024
  • quantiphyse Public

    Application for analysis and modelling of volumetric medical imaging data

    physimals/quantiphyse’s past year of commit activity
    Python 27 Apache-2.0 3 10 0 Updated May 15, 2024
  • fabber_models_asl Public

    Forward models using the Fabber framework for Arterial Spin Labelling MRI

    physimals/fabber_models_asl’s past year of commit activity
    C++ 1 Apache-2.0 4 1 0 Updated May 3, 2024
  • vaby_svb Public

    Stochastic variational bayes using the vaby framework

    physimals/vaby_svb’s past year of commit activity
    Python 1 0 0 0 Updated Apr 4, 2024
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