Test Harpy Modules

move pysam into main env #149

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Run time

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Job	Run time
Detect File Changes	6s
Build/Cache Container	9m 2s
align BWA	7m 49s
align EMA	8m 4s
harpy extras	0s
demux gen1	0s
freebayes	0s
impute	0s
mpileup	0s
sv leviathan	0s
phase	0s
preflight	5m 26s
sv naibr	0s
qc	9m 44s
simulate variants	0s
simulate linkedreads	0s
align strobe	6m 11s
	46m 22s