Test Harpy Modules

revisit downsample as a better SM workflow #467

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Run time

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Job	Run time
Detect File Changes	32s
Build/Cache Container	13m 40s
deconvolve	9m 13s
demux gen1	29m 53s
metassembly	43m 47s
align BWA	16m 50s
align EMA	21m 44s
freebayes	40m 2s
harpy extras	2m 55s
impute	30m 50s
sv leviathan	22m 44s
mpileup	16m 33s
sv naibr	40m 5s
phase	37m 26s
preflight	14m 10s
qc	21m 36s
simulate linkedreads	24m 18s
simulate variants	45m 56s
align strobe	14m 11s
	7h 26m 25s