Repositories list

• nuc2seg

  Public
  Whole cell segmentation for single-molecule spatial transcriptomics

  Python

  •

  Other

  •0•2•1•0•Updated Jan 23, 2025Jan 23, 2025

• bayestme

  Public
  BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data

  Jupyter Notebook

  •

  Other

  •3•15•6•1•Updated Nov 21, 2024Nov 21, 2024

• UnitedPPC

  Public
  A Bayesian probabilistic method to predict drug responses from transcriptomic data

  Jupyter Notebook

  •

  MIT License

  •3•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• nf-rnaseq

  Public
  A custom NextFlow RNA-seq pipeline for the Tansey lab

  Python

  •

  MIT License

  •0•0•0•0•Updated Aug 30, 2024Aug 30, 2024

• batchie

  Public
  Python

  •

  MIT License

  •1•2•0•1•Updated Jul 17, 2024Jul 17, 2024

• juno-nextflow-template

  Public
  Basic setup for running nextflow on juno

  Shell

  •2•1•0•0•Updated Feb 16, 2024Feb 16, 2024

• sksparse_minimal

  Public
  Drop in replacement for `sksparse` that doesn't require conda to install.

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •20•0•0•0•Updated Jan 2, 2024Jan 2, 2024

• imcode

  Public
  A model for IMC Data compression/decompression

  Python

  •0•0•0•0•Updated Dec 11, 2023Dec 11, 2023

• pyro_tutorial

  Public
  Python

  •0•3•0•0•Updated Nov 30, 2023Nov 30, 2023

• imc-tools

  Public
  Tools for working with IMC data

  Python

  •0•0•0•0•Updated Nov 3, 2023Nov 3, 2023

• protein-variant-nomenclature-parser

  Public
  Parser for colloquial protein variant nomenclature

  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 6, 2023Apr 6, 2023

• pdbal

  Public
  Simulation code from the paper "Targeted Active Learning for Probabilistic Models"

  Python

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Feb 7, 2023Feb 7, 2023