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30 Open 91 Closed
30 Open 91 Closed
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Issues list

Lift error if defocus_in_angstroms is negative
#304 opened Jan 2, 2025 by mjo22
equinox.internal.if_mapped is deprecated dependencies Pull requests that update a dependency file
#303 opened Dec 19, 2024 by mjo22
Remove cryojax.image.fftn, cryojax.image.ifftn, etc in favor of jax.numpy.fft functions question Further information is requested refactor
#299 opened Dec 16, 2024 by mjo22
1
Add unit tests for log likelihoods unit tests
#290 opened Dec 9, 2024 by mjo22
Add beam tilt term to the CTF enhancement New feature or request
#287 opened Dec 6, 2024 by mjo22
Faster implementation of the multislice integrator enhancement New feature or request
#286 opened Dec 6, 2024 by mjo22
Move features out of cryojax.experimental unit tests
#285 opened Dec 6, 2024 by mjo22
GaussianMixtureProjection may not give correct results when using upsampling_factor bug Something isn't working
#284 opened Dec 6, 2024 by mjo22
Add option in cxs.PengAtomicPotential to fix b factors.
#282 opened Nov 29, 2024 by Miro-Astore
1
Add error message to write_simulated_image_stack_from_starfile error handling
#281 opened Nov 26, 2024 by mjo22
Add more rectangular cosine masking enhancement New feature or request
#280 opened Nov 25, 2024 by mjo22
downsample_to_shape_with_fourier_cropping returns complex when asked for real bug Something isn't working
#278 opened Oct 18, 2024 by DSilva27
1
Implement solvation model from good for hackathon
#277 opened Oct 4, 2024 by geoffwoollard
1
jax.random.PRNGKey -> jax.random.key dependencies Pull requests that update a dependency file
#276 opened Oct 4, 2024 by DSilva27
@DSilva27
1
jax.tree_util -> jax.tree dependencies Pull requests that update a dependency file
#267 opened Sep 11, 2024 by mjo22
specify whether to use gemmis occupancy threshold when loading a pdb. cleanup
#262 opened Sep 6, 2024 by Miro-Astore
Allow varying defocus during imaging. feature
#261 opened Sep 3, 2024 by Miro-Astore
Update documentation in AbstractDataset to show proper creation of a custom pytorch dataset documentation Improvements or additions to documentation
#255 opened Aug 8, 2024 by mjo22
@mjo22 @DSilva27
1
More realistic water model enhancement New feature or request
#236 opened Jun 13, 2024 by geoffwoollard
@geoffwoollard
5
Complete documentation documentation Improvements or additions to documentation
#235 opened May 29, 2024 by mjo22
demo tutorials for building intuition of forward model documentation Improvements or additions to documentation good for hackathon
#230 opened May 18, 2024 by geoffwoollard
6 tasks
make notebooks on different image formation pipelines documentation Improvements or additions to documentation good for hackathon
#213 opened Apr 23, 2024 by geoffwoollard
1
add in bioem marginal distribution into cryojax.inference.distributions enhancement New feature or request
#208 opened Apr 15, 2024 by geoffwoollard
@geoffwoollard
3
Unit testing refactor refactor type checking unit tests
#191 opened Mar 24, 2024 by mjo22
Notes on Cowley (2006) "Scattering factors for the diffraction of electrons by crystalline solids" and references therein
#179 opened Mar 14, 2024 by geoffwoollard
5
ProTip! Follow long discussions with comments:>50.