Merge branch 'main' into 211-starfile-writer

mjo22 · Sep 11, 2024 · 0c51772 · 0c51772
2 parents b4b0548 + 295dd4a
commit 0c51772
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Showing 3 changed files with 33 additions and 35 deletions.
diff --git a/docs/api/simulator/potential_integrators.md b/docs/api/simulator/potential_integrators.md
@@ -26,16 +26,6 @@
 
 ---
 
-::: cryojax.simulator.EwaldSphereExtraction
-        options:
-            members:
-                - __init__
-                - compute_fourier_integrated_potential
-                - extract_voxels_from_spline_coefficients
-                - extract_voxels_from_grid_points
-
----
-
 ::: cryojax.simulator.NufftProjection
         options:
             members:

diff --git a/docs/examples/cross-correlation-search.ipynb b/docs/examples/cross-correlation-search.ipynb
diff --git a/docs/examples/read-dataset.ipynb b/docs/examples/read-dataset.ipynb
@@ -11,7 +11,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": 11,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -22,7 +22,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 12,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -43,7 +43,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 13,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -71,7 +71,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": 14,
    "metadata": {},
    "outputs": [
     {
@@ -132,7 +132,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": 15,
    "metadata": {},
    "outputs": [
     {
@@ -180,7 +180,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 16,
    "metadata": {},
    "outputs": [
     {
@@ -206,7 +206,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": 17,
    "metadata": {},
    "outputs": [
     {
@@ -239,7 +239,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
+   "execution_count": 18,
    "metadata": {},
    "outputs": [
     {
@@ -271,7 +271,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
+   "execution_count": 19,
    "metadata": {},
    "outputs": [
     {
@@ -326,7 +326,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": 20,
    "metadata": {},
    "outputs": [
     {
@@ -337,7 +337,7 @@
        " None]"
       ]
      },
-     "execution_count": 10,
+     "execution_count": 20,
      "metadata": {},
      "output_type": "execute_result"
     },