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inherit settings and data from previous assembly when using --paths compile and e.coli #674: Commit 7d57bda pushed by skoren
November 19, 2024 15:30 7m 12s master
master
November 19, 2024 15:30 7m 12s
remove bashism (#298) compile and e.coli #673: Commit 4bc7665 pushed by skoren
October 28, 2024 13:54 7m 2s master
master
October 28, 2024 13:54 7m 2s
fix corner case where haplogap fixing wants an overlap bigger than a … compile and e.coli #672: Commit eeae3b1 pushed by maickrau
October 28, 2024 13:01 8m 40s master
master
October 28, 2024 13:01 8m 40s
compatibility_fix compile and e.coli #671: Commit 4dff6c8 pushed by Dmitry-Antipov
October 22, 2024 15:07 2m 16s v1_fxd
v1_fxd
October 22, 2024 15:07 2m 16s
move gap limit handling to scfmap file compile and e.coli #670: Commit 212f251 pushed by skoren
October 17, 2024 13:20 8m 41s master
master
October 17, 2024 13:20 8m 41s
update to match gap processing of fasta file compile and e.coli #669: Commit 89a8379 pushed by skoren
October 16, 2024 21:06 8m 50s master
master
October 16, 2024 21:06 8m 50s
update version compile and e.coli #668: Commit 0ffbc34 pushed by skoren
September 27, 2024 15:43 8m 21s master
master
September 27, 2024 15:43 8m 21s
fx for canu version compile and e.coli #667: Commit bf219c9 pushed by Dmitry-Antipov
September 26, 2024 18:35 8m 44s master
master
September 26, 2024 18:35 8m 44s
Further speedup compile and e.coli #666: Commit f426da4 pushed by Dmitry-Antipov
September 26, 2024 17:54 7m 51s master
master
September 26, 2024 17:54 7m 51s
try fix conda compile and e.coli #665: Commit c04c74b pushed by skoren
September 26, 2024 13:56 9m 6s master
master
September 26, 2024 13:56 9m 6s
fix for non-scaffolding in alternative direction compile and e.coli #664: Commit 55e9c6e pushed by Dmitry-Antipov
September 26, 2024 02:06 57s master
master
September 26, 2024 02:06 57s
fix RG compile and e.coli #663: Commit cf66459 pushed by skoren
September 25, 2024 20:45 1m 10s master
master
September 25, 2024 20:45 1m 10s
add RG tags to bam to delineate read types compile and e.coli #662: Commit e6bb621 pushed by skoren
September 25, 2024 18:46 8m 41s master
master
September 25, 2024 18:46 8m 41s
parse new trm field compile and e.coli #661: Commit 3bcecbd pushed by skoren
September 24, 2024 18:52 8m 31s master
master
September 24, 2024 18:52 8m 31s
speedup - counting only necessary distances compile and e.coli #660: Commit 33c2079 pushed by Dmitry-Antipov
September 24, 2024 01:53 8m 9s master
master
September 24, 2024 01:53 8m 9s
usage improvements compile and e.coli #659: Commit 699b666 pushed by Dmitry-Antipov
September 21, 2024 20:05 9m 9s master
master
September 21, 2024 20:05 9m 9s
fix for cleanup crash compile and e.coli #658: Commit 4d75aa0 pushed by Dmitry-Antipov
September 21, 2024 19:53 8m 38s master
master
September 21, 2024 19:53 8m 38s
screen usage and readme update compile and e.coli #657: Commit f73c4ac pushed by Dmitry-Antipov
September 17, 2024 17:58 8m 27s master
master
September 17, 2024 17:58 8m 27s
switch screen human to screen-human-contaminants by popular demand compile and e.coli #656: Commit 2708d29 pushed by skoren
September 17, 2024 15:38 8m 47s master
master
September 17, 2024 15:38 8m 47s
Sort after updating node names compile and e.coli #655: Commit 4ac7c64 pushed by skoren
September 16, 2024 15:06 8m 58s master
master
September 16, 2024 15:06 8m 58s
remove bashism compile and e.coli #654: Commit ff591ba pushed by skoren
September 16, 2024 14:55 9m 22s master
master
September 16, 2024 14:55 9m 22s
detect and set local CPU/mem (issue #285) compile and e.coli #653: Commit ae4a3e3 pushed by skoren
September 16, 2024 14:35 5m 30s master
master
September 16, 2024 14:35 5m 30s
dont allow mixing trio/hic and remove cp error messages compile and e.coli #652: Commit 20d847d pushed by skoren
September 12, 2024 15:14 7m 28s master
master
September 12, 2024 15:14 7m 28s
rename output bams to use final contig names and coordinates (fixes #… compile and e.coli #651: Commit f0ba2b4 pushed by skoren
September 12, 2024 01:59 7m 24s master
master
September 12, 2024 01:59 7m 24s
bugfix compile and e.coli #650: Commit 9080e4a pushed by Dmitry-Antipov
September 10, 2024 21:25 7m 16s master
master
September 10, 2024 21:25 7m 16s