cnode

Software Installation on cnode

for users

You need to do almost nothing because our admins have done a lot for you (see sections 2) and 3) in detail).

Shared files for the training project

# Local Dirs:
 /Bio_II/lulab_b/shared/genomes/         #fasta and gtf/gff etc
 /Bio_II/lulab_b/shared/projects/exRNA   #raw data  

.bashrc

Here is an example of my .bashrc:

/home/john/.bashrc
/home/john/shortcuts

genomes

species	version	local dir	Notes	Person	Download Date	Download Link
Human	hg38	genomes/hg38	index: star, bowtie, bowtie2	Yang Li	2018.4.10.	ENSEMBL

data

Project	Table Name	Notes	Google Sheet	Local tsv	Person	Update Date
exRNA	exRNA-seq	human cancer			Wang Siqi	2018.4.25.

for admins