Correct the scientific_name_abbrev: pissa -> vigun #587
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| --- | |
| name: Validate | |
| on: [push] # yamllint disable-line rule:truthy | |
| jobs: | |
| yamllint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: yamllint | |
| uses: ibiqlik/action-yamllint@v3 | |
| with: | |
| config_data: | | |
| extends: default | |
| rules: | |
| document-start: disable | |
| empty-lines: disable | |
| trailing-spaces: disable | |
| line-length: | |
| max: 2000 | |
| schema-validate-readme: | |
| runs-on: ubuntu-latest | |
| env: | |
| AJV_OPTS: '-c ajv-formats --verbose --coerce-types=array --remove-additional=true --changes' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: legumeinfo/datastore-specifications | |
| path: datastore-specifications | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: datastore-metadata | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version: '22' | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.13' | |
| - name: Install AJV | |
| run: npm install -g [email protected] [email protected] | |
| - name: Check READMEs | |
| run: ajv ${AJV_OPTS} -s datastore-specifications/readme.schema.json -d '**/README.*.yml' | |
| - name: Check genera | |
| if: always() | |
| run: ajv ${AJV_OPTS} -s datastore-specifications/description_genus.schema.json -d '**/GENUS/about_this_collection/description_*.yml' | |
| - name: Check species | |
| if: always() | |
| run: ajv ${AJV_OPTS} -s datastore-specifications/description_genus_species.schema.json -d 'datastore-metadata/!(LEGUMES)/**/description_*_*.yml' | |
| - name: Install PyYAML | |
| run: | | |
| pip install --no-cache-dir PyYAML | |
| rm -rf datastore-specifications | |
| if: always() | |
| - name: Check identifiers | |
| # ensure <id>/README.<id>.yml contains "identifier: <id>" | |
| if: always() | |
| shell: python {0} | |
| run: | | |
| import sys, pathlib, yaml | |
| if (errpath := [path for path in pathlib.Path(".").rglob("README.*.yml") | |
| if (identifier := path.name.removeprefix("README.").removesuffix(".yml")) != path.parent.name | |
| or identifier != yaml.safe_load(open(path)).get("identifier")]): | |
| sys.exit(errpath) |