validate.yml

---
name: Validate
on: [push]  # yamllint disable-line rule:truthy
jobs:
  yamllint:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - name: yamllint
        uses: ibiqlik/action-yamllint@v3
        with:
          config_data: |
            extends: default
            rules:
              document-start: disable
              empty-lines: disable
              trailing-spaces: disable
              line-length:
                max: 2000

  schema-validate-readme:
    runs-on: ubuntu-latest
    env:
      AJV_OPTS: '-c ajv-formats --verbose --coerce-types=array --remove-additional=true --changes'
    steps:
      - uses: actions/checkout@v4
        with:
          repository: legumeinfo/datastore-specifications
          path: datastore-specifications
      - uses: actions/checkout@v4
        with:
          path: datastore-metadata
      - uses: actions/setup-node@v4
        with:
          node-version: '22'
      - uses: actions/setup-python@v5
        with:
          python-version: '3.13'
      - name: Install AJV
        run: npm install -g ajv-cli@5.0.0 ajv-formats@2.1.1
      - name: Check READMEs
        run: ajv ${AJV_OPTS} -s datastore-specifications/readme.schema.json -d '**/README.*.yml'
      - name: Check genera
        if: always()
        run: ajv ${AJV_OPTS} -s datastore-specifications/description_genus.schema.json -d '**/GENUS/about_this_collection/description_*.yml'
      - name: Check species
        if: always()
        run: ajv ${AJV_OPTS} -s datastore-specifications/description_genus_species.schema.json -d 'datastore-metadata/!(LEGUMES)/**/description_*_*.yml'
      - name: Install PyYAML
        run: |
          pip install --no-cache-dir PyYAML
          rm -rf datastore-specifications
        if: always()
      - name: Check identifiers
        # ensure <id>/README.<id>.yml contains "identifier: <id>"
        if: always()
        shell: python {0}
        run: |
          import sys, pathlib, yaml
          if (errpath := [path for path in pathlib.Path(".").rglob("README.*.yml")
                          if (identifier := path.name.removeprefix("README.").removesuffix(".yml")) != path.parent.name
                          or identifier != yaml.safe_load(open(path)).get("identifier")]):
              sys.exit(errpath)