refactor: assembling the app features in modular way

[bowenliang123]

Checklist:

Important

Please review the checklist below before submitting your pull request.

• Please open an issue before creating a PR or link to an existing issue
• I have performed a self-review of my own code
• I have commented my code, particularly in hard-to-understand areas
• I ran dev/reformat(backend) and cd web && npx lint-staged(frontend) to appease the lint gods

Description

• refactor the app preparation of app.py in modular way, by extending features with extensions
• output the time cost of applying each extension in milseconds when launching the service, for better understanding in exact features applied and their cost in launching time
• make DifyApp class as first class member for decoupling

Type of Change

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)
• This change requires a documentation update, included: Dify Document
• Improvement, including but not limited to code refactoring, performance optimization, and UI/UX improvement
• Dependency upgrade

Testing Instructions

Please describe the tests that you ran to verify your changes. Provide instructions so we can reproduce. Please also list any relevant details for your test configuration

• Test A
• Test B

[laipz8200]

Please resolve the conflicts, thanks

[bowenliang123]

It's now ready for review again, with all conflicts resolved and changes refactored. cc @laipz8200 @crazywoola

[bowenliang123]

Great! Another step forward.