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58 Open 188 Closed
58 Open 188 Closed
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Issues list

Quantification step fails with skimage.morphology.convex_hull ModuleNotFoundError error
#565 opened Nov 23, 2024 by emir-radkevich
22
Java and amd 64 errors when running illumination
#560 opened Sep 24, 2024 by eisele24
1
Backsub is not working with new update?
#559 opened Aug 31, 2024 by hegewisch15
4
specs for running on a workstation
#558 opened Aug 31, 2024 by bmyury
5
Working with IF Images from NanoString's GeoMx
#548 opened Apr 30, 2024 by SalimSoria
3
segementation using cell pose
#547 opened Apr 19, 2024 by yas92
1
CODEX Raw data
#545 opened Mar 26, 2024 by andreevg04
8
Does this pipeline support PhenoCycler-Fusion Codex format?
#541 opened Mar 9, 2024 by liuyang2006
7
Install/Tutorial -- it would be helpful to indicate disk requirements for exemplar cases
#539 opened Feb 24, 2024 by GaryAitken
ASHLAR/MCQUANT modules
#534 opened Jan 22, 2024 by MDHowe4
14
unstiched image
#526 opened Nov 6, 2023 by Elena983
11
MCMICRO: Cellpose Issue
#524 opened Oct 31, 2023 by virlyananda
3
The input format of CODEX Image to process MCMICRO
#521 opened Oct 11, 2023 by Yuchen588
4
Make the output of downstream modules Minerva-story ready
#513 opened Aug 10, 2023 by ciszew
8
Input structure to run .nd2 files as FOVs
#512 opened Jul 27, 2023 by Boehmin
4
Windows Remote Drive Issue: Failing to create symbolic link : Operation not permitted
#506 opened Jun 6, 2023 by josenimo
2
MCMICRO compatibility with in situ sequencing
#502 opened Apr 25, 2023 by rocketeer1998
2 tasks done
11
Input structure to run Akoya CODEX data
#501 opened Apr 20, 2023 by Lucas-Maciel
3
Create outline overlay using mesmer segmentation mask
#500 opened Apr 10, 2023 by janinemelsen
background:backsub and scimap support in mcmicro
#497 opened Apr 6, 2023 by JiayuanDing100
4
Consider CELESTA as a potential downstream module for MCMICRO
#494 opened Mar 23, 2023 by adamjtaylor
@adamjtaylor
Rethink file tagging
#492 opened Mar 22, 2023 by ArtemSokolov
How to use MCMICRO to process imaging mass cytometry (IMC) data ?
#483 opened Feb 23, 2023 by sanrishiguang
2
Kernel compatibility for singularity run
#482 opened Feb 20, 2023 by ciszew
3
quantification:mcquant error after segmentation with Mesmer
#475 opened Jan 24, 2023 by nancyliy
4
ProTip! Exclude everything labeled bug with -label:bug.