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@labsyspharm

Laboratory of Systems Pharmacology @ Harvard

Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.

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  1. ashlar ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    Python 128 42

  2. mcmicro mcmicro Public

    Multiple-choice microscopy pipeline

    Nextflow 113 58

  3. scimap scimap Public

    Spatial Single-Cell Analysis Toolkit

    Python 74 26

  4. minerva-story minerva-story Public

    Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

    HTML 50 14

  5. minerva_analysis minerva_analysis Public

    JavaScript 26 6

  6. cylinter cylinter Public

    An Interactive Image Segmentation Filter for Multiplex Microscopy

    Python 25 12

Repositories

Showing 10 of 156 repositories
  • harvardtissueatlas Public

    Harvard Tissue Atlas website

    labsyspharm/harvardtissueatlas’s past year of commit activity
    SCSS 3 6 2 0 Updated Nov 25, 2024
  • ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    labsyspharm/ashlar’s past year of commit activity
    Python 128 MIT 42 54 12 Updated Nov 25, 2024
  • prostate Public

    Analysis of prostate cancer CyCIF data

    labsyspharm/prostate’s past year of commit activity
    R 0 0 0 0 Updated Nov 23, 2024
  • stic-ms-2024 Public

    Custom codes related to Kader, Lin, Hug manuscript 2024

    labsyspharm/stic-ms-2024’s past year of commit activity
    R 0 0 0 0 Updated Nov 22, 2024
  • scimap Public

    Spatial Single-Cell Analysis Toolkit

    labsyspharm/scimap’s past year of commit activity
    Python 74 MIT 26 35 2 Updated Nov 21, 2024
  • minerva-core-ui Public

    A microscopy viewer for non-experts

    labsyspharm/minerva-core-ui’s past year of commit activity
    TypeScript 0 MIT 2 10 2 Updated Nov 21, 2024
  • minerva-author-ui Public

    Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.

    labsyspharm/minerva-author-ui’s past year of commit activity
    JavaScript 4 MIT 5 2 4 Updated Nov 21, 2024
  • cycif.org Public

    cycif.org GitHub Pages Website

    labsyspharm/cycif.org’s past year of commit activity
    JavaScript 2 MIT 9 4 4 Updated Nov 20, 2024
  • omero-oauth Public Forked from microscopepony/omero-oauth

    OMERO.web application to allow OAuth2 login to OMERO

    labsyspharm/omero-oauth’s past year of commit activity
    Python 1 AGPL-3.0 3 0 0 Updated Nov 19, 2024
  • minerva-browser Public
    labsyspharm/minerva-browser’s past year of commit activity
    JavaScript 4 MIT 5 10 3 Updated Nov 18, 2024
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