fiw input pan in projection cmd

labgem · Aug 8, 2023 · 9244967 · 9244967
1 parent 58ded6b
commit 9244967
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -122,6 +122,6 @@ jobs:
       shell: bash -l {0}
       run: |
         cd testingDataset
-        ppanggolin projection --pangenome myannopang/pangenome.h5  -o projection_from_gbff --organism_name trotro --annot GBFF/GCF_000026905.1_ASM2690v1_genomic.gbff.gz --spot_graph 
-        ppanggolin projection --pangenome myannopang/pangenome.h5  -o projection_from_fasta --organism_name trotro --fasta FASTA/GCF_000026905.1_ASM2690v1_genomic.fna.gz --spot_graph --graph_formats graphml
+        ppanggolin projection --pangenome mybasicpangenome/pangenome.h5  -o projection_from_gbff --organism_name trotro --annot GBFF/GCF_000026905.1_ASM2690v1_genomic.gbff.gz --spot_graph 
+        ppanggolin projection --stepbystep mybasicpangenome/pangenome.h5  -o projection_from_fasta --organism_name trotro --fasta FASTA/GCF_000026905.1_ASM2690v1_genomic.fna.gz --spot_graph --graph_formats graphml