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  1. PPanGGOLiN PPanGGOLiN Public

    Build a partitioned pangenome graph from microbial genomes

    Python 242 30

  2. PlaScope PlaScope Public

    🔬 ⭕ Plasmid exploration of bacterial genomes

    Roff 17 4

  3. netsyn netsyn Public

    NetSyn is a tool to detect conserved genomic contexts (i.e. synteny conservation) among a list of protein targets.

    Python 7 1

  4. pangenomeNEM pangenomeNEM Public

    C 4

  5. ASMC ASMC Public

    ASMC is a precision tool for deciphering the amino acid diversity that composes the active site of a given homologous protein family.

    Python 4

  6. microscope-user-doc microscope-user-doc Public

    MicroScope Platform User Documentation

    3 6

Repositories

Showing 10 of 12 repositories
  • PPanGGOLiN Public

    Build a partitioned pangenome graph from microbial genomes

    labgem/PPanGGOLiN’s past year of commit activity
    Python 242 30 11 2 Updated Nov 20, 2024
  • netsyn Public

    NetSyn is a tool to detect conserved genomic contexts (i.e. synteny conservation) among a list of protein targets.

    labgem/netsyn’s past year of commit activity
    Python 7 1 1 0 Updated Nov 15, 2024
  • microscope-user-doc Public

    MicroScope Platform User Documentation

    labgem/microscope-user-doc’s past year of commit activity
    3 6 0 0 Updated Oct 8, 2024
  • CAESAR Public
    labgem/CAESAR’s past year of commit activity
    Python 0 0 0 0 Updated Sep 30, 2024
  • ASMC Public

    ASMC is a precision tool for deciphering the amino acid diversity that composes the active site of a given homologous protein family.

    labgem/ASMC’s past year of commit activity
    Python 4 0 0 0 Updated Sep 17, 2024
  • PanGBank-test-datasets Public

    Test data to be used for automated testing with the pangbank pipeline.

    labgem/PanGBank-test-datasets’s past year of commit activity
    0 0 0 0 Updated Sep 11, 2024
  • asmc_2016 Public

    ASMC code from de Melo-Minardi et al. (2010) [doi: 10.1093/bioinformatics/btq595], updated in 2016.

    labgem/asmc_2016’s past year of commit activity
    Shell 0 0 0 0 Updated Apr 16, 2024
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    labgem/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,305 0 0 Updated Feb 13, 2023
  • phigaro Public Forked from bobeobibo/phigaro

    Phigaro is a scalable command-line tool for predicting phages and prophages

    labgem/phigaro’s past year of commit activity
    HTML 0 MIT 15 0 0 Updated Apr 28, 2022
  • PlaScope Public

    🔬 ⭕ Plasmid exploration of bacterial genomes

    labgem/PlaScope’s past year of commit activity
    Roff 17 GPL-3.0 4 3 1 Updated Mar 2, 2022
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