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Test overhaul/upstream branch#4

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kostrykin wants to merge 116 commits intomasterkostrykin/galaxy-image-analysis:masterfrom overhaul/devkostrykin/galaxy-image-analysis:overhaul/devCopy head branch name to clipboard

+1,517-656

Commits

Commits on Feb 12, 2024

• Rename tools

  Show description for 2d84f5c
  kostrykin

  committed
  2d84f5c

• Update projective_transformation.xml

  kostrykin

  authored
  d337410

• Update projective_transformation_points.xml

  kostrykin

  authored
  a44636a

Commits on Mar 14, 2024

• Add CONVENTIONS.md

  kostrykin

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• wip

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• wip

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  024cd7f

• Update CONVENTIONS.md

  kostrykin

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  39293ef

• Update CONVENTIONS.md

  kostrykin

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  7ddb74f

• Update CONVENTIONS.md

  kostrykin

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• Update CONVENTIONS.md

  kostrykin

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  beee49e

• Update CONVENTIONS.md

  kostrykin

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  30fe566

• Update CONVENTIONS.md

  kostrykin

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  2abd20a

• Remove help section

  kostrykin

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  76ea28f

• Update CONVENTIONS.md

  kostrykin

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• Update CONVENTIONS.md

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• Update CONVENTIONS.md

  kostrykin

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Commits on Mar 15, 2024

• Update

  kostrykin

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  fdbb4fe

• Merge branch 'master' into overhaul/dev

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  4f9d207

• Merge remote-tracking branch 'origin/tool-name-update' into overhaul/dev

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  d351199

• Update test data

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  821f9bc

• Add content assertions

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• Update pr.yaml

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  9a58812

• Update

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• Update pr.yaml

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• Add pip install pillow

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  af67010

• Merge CONVENTIONS.md into CONTRIBUTING.md

  kostrykin

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  5aab5c0

• Temporarilly fix CI

  kostrykin

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  ea9887d

• Update 2d_feature_extraction tool

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  145f22b

• Update 2d_auto_threshold tool

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  3b82fad

• Fix 2d_feature_extraction tests

  kostrykin

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  7a80b1a

• Fix test data

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  4c7316a

• Fix tool

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  84b28dd

• Start refactoring 2d_simple_filter tool

  kostrykin

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  539e13d

• Merge branch 'overhaul/dev' of https://github.com/kostrykin/galaxy-image-analysis into overhaul/dev

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  5991306

• Fix 2d_simple_filter tool

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  8430c9c

• Add more tests

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  0a40dad

• Fix tests

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  a28640e

• Update

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  a397841

• Fix

  kostrykin

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  b3e9ace

• Update CONTRIBUTING.md

  kostrykin

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  4fc1033

• Fix bugs

  kostrykin

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• Update CONTRIBUTING.md

  kostrykin

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  d77d07b

• Update CONTRIBUTING.md

  kostrykin

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Commits on Mar 16, 2024

• Fix linting issues

  kostrykin

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  4cbab2d

• Update CONTRIBUTING.md

  kostrykin

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• Refactor tests using macros

  kostrykin

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  9158478

• Update tests

  kostrykin

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  5879277

• Merge branch 'overhaul/dev' of github.com:kostrykin/galaxy-image-analysis into overhaul/dev

  kostrykin

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  785c6cb

• Update CONTRIBUTING.md

  kostrykin

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  262ca03

• Update CONTRIBUTING.md

  kostrykin

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  ae4c278

• Update pr.yaml

  kostrykin

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  959fb90

• Update anisotropic_diffusion tool

  kostrykin

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  05164b2

• Fix spelling (was BE, using AE is more consistent)

  kostrykin

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  a51dd5d

• Update 2d_histogram_equalization tool

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  112a124

• Update colorize_labels tool

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  34843ed

• Update bf2raw tool

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  b4ca632

• Add macros/creators.xml

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  5a321ea

• Update rfove tool

  kostrykin

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  8edadaa

• Fix bioformats2raw and voronoi_tessellation tools

  kostrykin

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  2fb5d6e

• Fix labels

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  18fbcf0

• Fix rfove tool

  kostrykin

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  6165546

• Update overlay_images tool

  kostrykin

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  39e29fb

• Add RGB test for overlay_images

  kostrykin

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  523e653

• Update overlay_images help

  kostrykin

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  07cd6a0

Commits on Mar 18, 2024

• Merge branch 'master' into overhaul/dev

  kostrykin

  committed
  756a763

• Update CONTRIBUTING.md

  kostrykin

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  379ca30

• Update test data

  kostrykin

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  e30849c

• Add RGB test for overlay_images

  kostrykin

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  1cf5aa6

• Update anisotropic_diffusion to medpy 0.4.0

  kostrykin

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  a426126

• Update PULL_REQUEST_TEMPLATE.md

  kostrykin

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  553b826

• Update projective_transformation_points tool

  kostrykin

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  a8a046c

• Update PULL_REQUEST_TEMPLATE.md

  kostrykin

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  b429c40

• Update bioformats2raw

  kostrykin

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  ea016d5

• Merge branch 'overhaul/dev' of github.com:kostrykin/galaxy-image-analysis into overhaul/dev

  kostrykin

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  7a1c096

• Update projective_transformation tool

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  47fb8ff

• Update bfconvert tool (tests failing)

  kostrykin

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  aa43c16

Commits on Mar 19, 2024

• Update CONTRIBUTING.md

  kostrykin

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  1f482e9

• Fix bfconvert tests

  kostrykin

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  cb05359

• Fix test data size

  kostrykin

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  afc8190

• Update projective_transformation_points tool

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  279d936

• Remove spurious files

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  54853f3

• Update requirements using @TOOL_VERSION@ macro

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  d3a8997

• Update segmetrics tool

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  45fa59f

• Remove spurious sym links

  kostrykin

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  6c02b60

• Update superdsm tool

  kostrykin

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  affd76b

• Update scale_image tool (not finished yet)

  kostrykin

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  493adf4

• Fix tests

  kostrykin

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  9165189

• Fix scale_image tool

  kostrykin

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  aaff8b9

• Refactor

  kostrykin

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  75453a5

• Fix linting issues

  kostrykin

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  f749a35

Commits on Mar 20, 2024

• Update tests and help of 2d_simple_filter tool

  kostrykin

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  a074b7d

• Update scale_image help

  kostrykin

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  58052d7

• Update CI to use latest version of galaxy fork

  kostrykin

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  a4faa4e

• Fix tests for float TIFF in scale_image tool

  kostrykin

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  acd17d1

• Add tifffile to CI workflows

  kostrykin

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  ad14c4a

• Fix tests of bfconvert tool

  kostrykin

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  9c48179

• Update 2d_filter_segmentation_by_features tool

  kostrykin

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  f33eee4

• Update image_math tool

  kostrykin

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  830af8d

• Update orientationpy tool

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  aed27ab

• Update morphological_operations tool

  kostrykin

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  a372bad

• Update split_labelmap tool

  kostrykin

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  ab42abd

Commits on Mar 21, 2024

• Add float TIFF test for 2d_simple_filter

  kostrykin

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  a06833f

• Update slice_image tool

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  33135f3

• Add missing macros

  kostrykin

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  dd3e6d4

• Update help of 2d_filter_segmentation_by_features tool

  kostrykin

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  80df3aa

• Update concat_images tool

  kostrykin

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  69f59ba

• Fix linting issues

  kostrykin

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  7fc8c41

• Fix file sizes

  kostrykin

  committed
  df87279

• Fix missing profile

  kostrykin

  committed
  a4852b6

• Update 23 tools

  Show description for 5fd315e
  kostrykin

  authored
  5fd315e

• Merge branch 'master' into overhaul/upstream

  kostrykin

  committed
  6904d1d

Commits on Mar 28, 2024

• Merge branch 'overhaul/upstream' into overhaul/dev

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  committed
  ab5d053

Commits on Apr 4, 2024

• Update tests/label_image_diff macro

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  4121085

• Trigger CI

  kostrykin

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  a0cc9f1

• Update macros

  kostrykin

  committed
  f05c2aa

• Update CONTRIBUTING.md

  kostrykin

  authored
  e3483f4